Several remarks on the metric space of genetic codes. - David Weisman; Dan A. Simovici (Int. J. Data Min. Bioinform., 2012)

FunFrame: functional gene ecological analysis pipeline. - David Weisman; Michie Yasuda; Jennifer L. Bowen (Bioinform., 2013)

TIDE: Inter-chromosomal translocation and insertion detection using embeddings. - Rosanne Vetro; Roshanak Farhoodi; Rohith Kotla; Nurit Haspel; David Weisman; Jennifer Rosen; Dan A. Simovici (IEEE BigData, 2014)