RAP: a new computer program for de novo identification of repeated sequences in whole genomes. - Davide Campagna; Chiara Romualdi; Nicola Vitulo; Micky Del Favero; Matej Lexa; Nicola Cannata; Giorgio Valle (Bioinform., 2005)

PASS: a program to align short sequences. - Davide Campagna; Alessandro Albiero; Alessandra Bilardi; Elisa Caniato; Claudio Forcato; Svetlin Manavski; Nicola Vitulo; Giorgio Valle (Bioinform., 2009)

PASS-bis: a bisulfite aligner suitable for whole methylome analysis of Illumina and SOLiD reads. - Davide Campagna; Andrea Telatin; Claudio Forcato; Nicola Vitulo; Giorgio Valle (Bioinform., 2013)