Structural landscape of immunoglobulin lambda light chains. - Anna Chailyan; Davide Cirillo; Paolo Marcatili; Anna Tramontano (BCB, 2010)

catRAPID omics: a web server for large-scale prediction of protein-RNA interactions. - Federico Agostini; Andreas Zanzoni; Petr Klus; Domenica Marchese; Davide Cirillo; Gian Gaetano Tartaglia (Bioinform., 2013)

ccSOL omics: a webserver for solubility prediction of endogenous and heterologous expression in Escherichia coli. - Federico Agostini; Davide Cirillo; Carmen Maria Livi; Riccardo Delli Ponti; Gian Gaetano Tartaglia (Bioinform., 2014)

omiXcore: a web server for prediction of protein interactions with large RNA. - Alexandros Armaos; Davide Cirillo; Gian Gaetano Tartaglia (Bioinform., 2017)

Algorithmic complexity in Computational Biology. - Davide Cirillo; Alfonso Valencia (CoRR, 2018)

GOPHER, an HPC Framework for Large Scale Graph Exploration and Inference. - Marc Josep-Fabregó; Xavier Teruel; Victor Gimenez-Abalos; Davide Cirillo; Dario Garcia-Gasulla; Sergio Álvarez-Napagao; Marta Garcia-Gasulla; Eduard Ayguadé; Alfonso Valencia (ISC Workshops, 2020)

Sex and gender differences and biases in artificial intelligence for biomedicine and healthcare. - Davide Cirillo; Silvina Catuara-Solarz; Czuee Morey; Emre Guney; Laia Subirats; Simona Mellino; Annalisa Gigante; Alfonso Valencia; María-José Rementeria; Antonella Santuccione Chadha; Nikolaos Mavridis (npj Digit. Medicine, 2020)

Simulating SARS-CoV-2 epidemics by region-specific variables and modeling contact tracing app containment. - Alberto Ferrari; Enrico Santus; Davide Cirillo; Miguel Ponce de Leon; Nicola Marino; Maria Teresa Ferretti; Antonella Santuccione Chadha; Nikolaos Mavridis; Alfonso Valencia (npj Digit. Medicine, 2021)

Harnessing the Computing Continuum Across Personalized Healthcare, Maintenance and Inspection, and Farming 4.0. - Fatemeh Baghdadi; Davide Cirillo; Daniele Lezzi; Francesc Lordan; Fernando Vázquez; Eugenio Lomurno; Alberto Archetti; Danilo Ardagna; Matteo Matteucci (CLOSER, 2024)

Applying a Task-Based Approach to Distributed Machine Learning Workflows. - Fernando Vázquez-Novoa; Daniele Lezzi; Francesc Lordan; Fatemeh Baghdadi; Davide Cirillo (SC Workshops, 2024)

Abortion and Miscarriage on Twitter: Sentiment and Polarity Analysis from a gendered perspective. - Olivier Philippe; María Flores Rodero; Claire Yohalem Furtick; Laura Planas Simón; Maria Teresa Ferretti; Antonella Santuccione Chadha; Laia Subirats Maté; Davide Cirillo; María-José Rementeria (WebSci, 2024)

Synthetic data: How could it be used for infectious disease research? - Styliani-Christina Fragkouli; Dhwani Solanki; Leyla Jael Castro; Fotis E. Psomopoulos; Núria Queralt-Rosinach; Davide Cirillo; Lisa C. Crossman (CoRR, 2024)

Open and Sustainable AI: challenges, opportunities and the road ahead in the life sciences. - Gavin Farrell; Eleni Adamidi; Rafael Andrade Buono; Mihail Anton; Omar Abdelghani Attafi; Salvador Capella-Gutiérrez; Emidio Capriotti; Leyla Jael Castro; Davide Cirillo; Lisa C. Crossman; Christophe Dessimoz; Alexandros C. Dimopoulos; et al. (CoRR, 2025)