SamPler - a novel method for selecting parameters for gene functional annotation routines. - Fernando Cruz; Davide Lagoa; João Mendes; Isabel Rocha; Eugénio C. Ferreira; Miguel Rocha 001; Oscar Dias (BMC Bioinform., 2019)

The first multi-tissue genome-scale metabolic model of a woody plant highlights suberin biosynthesis pathways in Quercus suber. - Emanuel Cunha; Miguel Silva; Inês Chaves; Hüseyin Demirci; Davide Lagoa; Diogo Lima; Miguel Rocha 001; Isabel Rocha; Oscar Dias (PLoS Comput. Biol., 2023)

TranSyT, an innovative framework for identifying transport systems. - Emanuel Cunha; Davide Lagoa; José P. Faria; Filipe Liu; Christopher S. Henry; Oscar Dias (Bioinform., 2023)