Fast-GBS: a new pipeline for the efficient and highly accurate calling of SNPs from genotyping-by-sequencing data. - Davoud Torkamaneh; Jérôme Laroche; Maxime Bastien; Amina Abed; François Belzile (BMC Bioinform., 2017)

SRG extractor: a skinny reference genome approach for reduced-representation sequencing. - Davoud Torkamaneh; Jérôme Laroche; Istvan Rajcan; François Belzile (Bioinform., 2019)

DepthFinder: a tool to determine the optimal read depth for reduced-representation sequencing. - Davoud Torkamaneh; Jérôme Laroche; Brian Boyle; François Belzile (Bioinform., 2020)

Artificial intelligence in variant calling: a review. - Omar Abdelwahab; Davoud Torkamaneh (Frontiers Bioinform., 2025)