Automated scalable segmentation of neurons from multispectral images. - Uygar Sümbül; Douglas H. Roossien; Dawen Cai; Fei Chen; Nicholas Barry; John P. Cunningham; Edward S. Boyden; Liam Paninski (NIPS, 2016)

Weakly Supervised Actor-Action Segmentation via Robust Multi-task Ranking. - Yan Yan 002; Chenliang Xu; Dawen Cai; Jason J. Corso (CVPR, 2017)

Multispectral tracing in densely labeled mouse brain with nTracer. - Douglas H. Roossien; Benjamin V. Sadis; Yan Yan 002; John M. Webb; Lia Y. Min; Aslan S. Dizaji; Luke J. Bogart; Cristina Mazuski; Robert S. Huth; Johanna S. Stecher; Sriakhila Akula; Fred Y. Shen; et al. (Bioinform., 2019)

A Weakly Supervised Multi-task Ranking Framework for Actor-Action Semantic Segmentation. - Yan Yan 002; Chenliang Xu; Dawen Cai; Jason J. Corso (Int. J. Comput. Vis., 2020)

Unsupervised Neural Tracing In Densely Labeled Multispectral Brainbow Images. - Bin Duan; Logan A. Walker; Douglas H. Roossien; Fred Y. Shen; Dawen Cai; Yan Yan 002 (ISBI, 2021)

nGauge: Integrated and Extensible Neuron Morphology Analysis in Python. - Logan A. Walker; Jennifer S. Williams; Ye Li; Douglas H. Roossien; Wei Jie Lee; Nigel S. Michki; Dawen Cai (Neuroinformatics, 2022)

MLP-GAN for Brain Vessel Image Segmentation. - Bin Xie; Hao Tang 005; Bin Duan; Dawen Cai; Yan Yan 002 (ICASSP, 2023)

A Comparison of Lossless Compression Methods in Microscopy Data Storage Applications: Microscopy compression comparison. - Logan Alexander Walker; Ye Li; Maggie Mcglothlin; Dawen Cai (ICSIM, 2023)

Optimized Neuron Tracing Using Post Hoc Reanalysis. - Sara Azzouz; Logan A. Walker; Alexandra Doerner; Kellie L. Geisel; Arianna K. Rodríguez Rivera; Ye Li; Douglas H. Roossien; Dawen Cai (ISBI, 2023)

Cell Instance Segmentation VIA Multi-Scale Non-Local Correlation. - Bin Duan; Jianfeng Cao; Wei Wang 108; Dawen Cai; Yan Yan 002 (ISBI, 2023)

Few-shot Medical Image Segmentation with Cycle-resemblance Attention. - Hao Ding; Changchang Sun; Hao Tang 005; Dawen Cai; Yan Yan 002 (WACV, 2023)

MS-UMLP: Medical Image Segmentation via Multi-Scale U-shape MLP-Mixer. - Bin Xie; Hao Tang 005; Dawen Cai; Yan Yan 002 (ACCV (10), 2024)

Gated Multi-Scale Attention Transformer For Few-Shot Medical Image Segmentation. - Zhenghao Zhao; Hao Ding; Dawen Cai; Yan Yan 002 (ISBI, 2024)

Online Multi-spectral Neuron Tracing. - Bin Duan; Yuzhang Shang; Dawen Cai; Yan Yan 002 (CoRR, 2024)

MaskSAM: Towards Auto-prompt SAM with Mask Classification for Medical Image Segmentation. - Bin Xie; Hao Tang 005; Bin Duan; Dawen Cai; Yan Yan 002 (CoRR, 2024)

Online Multispectral Neuron Tracing. - Bin Duan; Yuzhang Shang; Dawen Cai; Yan Yan 002 (ISBI, 2025)

Self-Prompt SAM: Medical Image Segmentation via Automatic Prompt SAM Adaptation. - Bin Xie; Hao Tang 005; Dawen Cai; Yan Yan 002; Gady Agam (CoRR, 2025)

ZECO: ZeroFusion Guided 3D MRI Conditional Generation. - Feiran Wang; Bin Duan; Jiachen Tao; Nikhil Sharma; Dawen Cai; Yan Yan 002 (CoRR, 2025)