A Kinematics-based Probabilistic Roadmap Method for High DOF Closed Chain Systems. - Dawen Xie; Nancy M. Amato (ICRA, 2004)

Iterative relaxation of constraints: a framework for improving automated motion planning. - O. Burçhan Bayazit; Dawen Xie; Nancy M. Amato (IROS, 2005)

Incremental Map Generation (IMG). - Dawen Xie; Marco Morales 001; Roger A. Pearce; Shawna L. Thomas; Jyh-Ming Lien; Nancy M. Amato (WAFR, 2006)

High-Performance Interaction-Based Simulation of Gut Immunopathologies with ENteric Immunity Simulator (ENISI). - Keith R. Bisset; Md. Maksudul Alam; Josep Bassaganya-Riera; Adria Carbo; Stephen G. Eubank; Raquel Hontecillas; Stefan Hoops; Yongguo Mei; Katherine V. Wendelsdorf; Dawen Xie; Jae-Seung Yeom; Madhav V. Marathe (IPDPS, 2012)

Planning and response in the aftermath of a large crisis: An agent-based informatics framework. - Christopher L. Barrett; Keith R. Bisset; Shridhar Chandan; Jiangzhuo Chen; Youngyun Chungbaek; Stephen G. Eubank; C. Yaman Evrenosoglu; Bryan L. Lewis; Kristian Lum; Achla Marathe; Madhav V. Marathe; Henning S. Mortveit; et al. (WSC, 2013)

From 5Vs to 6Cs: Operationalizing Epidemic Data Management with COVID-19 Surveillance. - Akhil Sai Peddireddy; Dawen Xie; Pramod Patil; Mandy L. Wilson; Dustin Machi; Srinivasan Venkatramanan; Brian Klahn; Przemyslaw J. Porebski; Parantapa Bhattacharya; Shirish Dumbre; Erin Raymond; Madhav V. Marathe (IEEE BigData, 2020)

The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities. - James J. Davis 002; Alice R. Wattam; Ramy K. Aziz; Thomas S. Brettin; Ralph Butler; Rory Butler; Philippe Chlenski; Neal Conrad; Allan Dickerman; Emily M. Dietrich; Joseph L. Gabbard; Svetlana Gerdes; et al. (Nucleic Acids Res., 2020)

AI-Driven Agent-Based Models to Study the Role of Vaccine Acceptance in Controlling COVID-19 Spread in the US. - Parantapa Bhattacharya; Dustin Machi; Jiangzhuo Chen; Stefan Hoops; Bryan L. Lewis; Henning S. Mortveit; Srinivasan Venkatramanan; Mandy L. Wilson; Achla Marathe; Przemyslaw J. Porebski; Brian Klahn; Joseph Outten; et al. (IEEE BigData, 2021)

High Performance Agent-Based Modeling to Study Realistic Contact Tracing Protocols. - Stefan Hoops; Jiangzhuo Chen; Abhijin Adiga; Bryan L. Lewis; Henning S. Mortveit; Hannah Baek; Mandy L. Wilson; Dawen Xie; Samarth Swarup; Srinivasan Venkatramanan; Justin Crow; Elena Diskin; et al. (WSC, 2021)

Synthetic Information and Digital Twins for Pandemic Science: Challenges and Opportunities. - Galen Harrison; Przemyslaw J. Porebski; Jiangzhuo Chen; Mandy L. Wilson; Henning S. Mortveit; Parantapa Bhattacharya; Dawen Xie; Stefan Hoops; Anil Vullikanti; Li Xiong; James Joshi; Madhav V. Marathe (TPS-ISA, 2023)

Data-driven scalable pipeline using national agent-based models for real-time pandemic response and decision support. - Parantapa Bhattacharya; Jiangzhuo Chen; Stefan Hoops; Dustin Machi; Bryan L. Lewis; Srinivasan Venkatramanan; Mandy L. Wilson; Brian Klahn; Aniruddha Adiga; Benjamin Hurt; Joseph Outten; Abhijin Adiga; et al. (Int. J. High Perform. Comput. Appl., 2023)

A High-Resolution, US-scale Digital Similar of Interacting Livestock, Wild Birds, and Human Ecosystems with Applications to Multi-host Epidemic Spread. - Abhijin Adiga; Ayush Chopra; Mandy L. Wilson; S. S. Ravi; Dawen Xie; Samarth Swarup; Bryan Lewis 001; Ramesh Raskar; Madhav V. Marathe (CoRR, 2024)

Novel multi-cluster workflow system to support real-time HPC-enabled epidemic science: Investigating the impact of vaccine acceptance on COVID-19 spread. - Parantapa Bhattacharya; Dustin Machi; Jiangzhuo Chen; Stefan Hoops; Bryan Lewis 001; Henning S. Mortveit; Srinivasan Venkatramanan; Mandy L. Wilson; Achla Marathe; Przemyslaw J. Porebski; Brian Klahn; Joseph Outten; et al. (J. Parallel Distributed Comput., 2024)