DeepSignal: detecting DNA methylation state from Nanopore sequencing reads using deep-learning. - Peng Ni; Neng Huang; Zhi Zhang; De-Peng Wang; Fan Liang; Yu Miao; Chuan-Le Xiao; Feng Luo 001; Jianxin Wang 001 (Bioinform., 2019)

NextPolish2: A Repeat-aware Polishing Tool for Genomes Assembled Using HiFi Long Reads. - Jiang Hu; Zhuo Wang; Fan Liang; Shanlin Liu; Kai Ye 001; De-Peng Wang (Genom. Proteom. Bioinform., 2024)