Nonadditivity in public and inhouse data: implications for drug design. - Dea Gogishvili; Eva Nittinger; Christian Margreitter; Christian Tyrchan (J. Cheminformatics, 2021)

Ten quick tips for sequence-based prediction of protein properties using machine learning. - Qingzhen Hou; Katharina Waury; Dea Gogishvili; K. Anton Feenstra (PLoS Comput. Biol., 2022)

PatchProt: Hydrophobic patch prediction using protein foundation models. - Dea Gogishvili; Emmanuel Minois-Genin; Jan van Eck; Sanne Abeln (CoRR, 2024)

PLM-eXplain: Divide and Conquer the Protein Embedding Space. - Jan van Eck; Dea Gogishvili; Wilson Silva; Sanne Abeln (CoRR, 2025)