Measuring and Modeling Soft Tissue Deformation for Image Guided Interventions. - David J. Hawkes; Philip J. Edwards; Dean C. Barratt; Jane M. Blackall; Graeme P. Penney; Christine Tanner (IS4TH, 2003)

Cadaver Validation of the Use of Ultrasound for 3D Model Instantiation of Bony Anatomy in Image Guided Orthopaedic Surgery. - Carolyn S. K. Chan; Dean C. Barratt; Philip J. Edwards; Graeme P. Penney; Mike Slomczykowski; Timothy J. Carter; David J. Hawkes (MICCAI (2), 2004)

Reconstruction and quantification of the carotid artery bifurcation from 3-D ultrasound images. - Dean C. Barratt; Ben B. Ariff; Keith N. Humphries; Simon A. Thom; Alun D. Hughes (IEEE Trans. Medical Imaging, 2004)

Self-Calibrating Ultrasound-to-CT Bone Registration. - Dean C. Barratt; Graeme P. Penney; Carolyn S. K. Chan; Mike Slomczykowski; Timothy J. Carter; Philip J. Edwards; David J. Hawkes (MICCAI, 2005)

Tissue deformation and shape models in image-guided interventions: a discussion paper. - David J. Hawkes; Dean C. Barratt; Jane M. Blackall; Carolyn S. K. Chan; Philip J. Edwards; Kawal S. Rhode; Graeme P. Penney; Jamie McClelland; Derek L. G. Hill (Medical Image Anal., 2005)

Operator dependence of 3-D ultrasound-based computational fluid dynamics forthe carotid bifurcation. - Fadi Glor; Ben B. Ariff; Alun D. Hughes; Pascal R. Verdonck; Simon A. Thom; Dean C. Barratt; X. Yun Xu (IEEE Trans. Medical Imaging, 2005)

Cadaver validation of intensity-based ultrasound to CT registration. - Graeme P. Penney; Dean C. Barratt; Carolyn S. K. Chan; Mike Slomczykowski; Timothy J. Carter; Philip J. Edwards; David J. Hawkes (Medical Image Anal., 2006)

Self-calibrating 3D-ultrasound-based bone registration for minimally invasive orthopedic surgery. - Dean C. Barratt; Graeme P. Penney; Carolyn S. K. Chan; Mike Slomczykowski; Timothy J. Carter; Philip J. Edwards; David J. Hawkes (IEEE Trans. Medical Imaging, 2006)

Motion and Biomechanical Models for Image-Guided Interventions. - David J. Hawkes; Graeme P. Penney; David Atkinson; Dean C. Barratt; Jane M. Blackall; Timothy J. Carter; William R. Crum; Jamie McClelland; Christine Tanner; Ségolène M. Tarte; Mark White 001 (ISBI, 2007)

Quantification of Blood Flow from Rotational Angiography. - Irina Wächter; Jörg Bredno; Dean C. Barratt; Jürgen Weese; David J. Hawkes (MICCAI (1), 2007)

Quantifying blood flowdivision at bifurcations from rotational angiography. - Irina Wächter; Jörg Bredno; Roel Hermans; Dean C. Barratt; Jürgen Weese; David J. Hawkes (ISBI, 2008)

Modelling Prostate Gland Motion for Image-Guided Interventions. - Yipeng Hu; Dominic Morgan; Hashim Uddin Ahmed; Doug Pendsé; Mahua Sahu; Clare Allen; Mark Emberton; David J. Hawkes; Dean C. Barratt (ISBMS, 2008)

MR Navigated Breast Surgery: Method and Initial Clinical Experience. - Timothy J. Carter; Christine Tanner; Nicolas Beechey-Newman; Dean C. Barratt; David J. Hawkes (MICCAI (2), 2008)

A Statistical Motion Model Based on Biomechanical Simulations for Data Fusion during Image-Guided Prostate Interventions. - Yipeng Hu; Dominic Morgan; Hashim Uddin Ahmed; Doug Pendsé; Mahua Sahu; Clare Allen; Mark Emberton; David J. Hawkes; Dean C. Barratt (MICCAI (1), 2008)

Instantiation and registration of statistical shape models of the femur and pelvis using 3D ultrasound imaging. - Dean C. Barratt; Carolyn S. K. Chan; Philip J. Edwards; Graeme P. Penney; Mike Slomczykowski; Timothy J. Carter; David J. Hawkes (Medical Image Anal., 2008)

Model-based blood flow quantification from rotational angiography. - Irina Wächter; Jörg Bredno; Roel Hermans; Jürgen Weese; Dean C. Barratt; David J. Hawkes (Medical Image Anal., 2008)

MR to Ultrasound Image Registration for Guiding Prostate Biopsy and Interventions. - Yipeng Hu; Hashim Uddin Ahmed; Clare Allen; Doug Pendsé; Mahua Sahu; Mark Emberton; David J. Hawkes; Dean C. Barratt (MICCAI (1), 2009)

Simulating Dynamic Ultrasound Using MR-derived Motion Models to Assess Respiratory Synchronisation for Image-Guided Liver Interventions. - Erik-Jan Rijkhorst; Daniel Heanes; Freddy Odille; David J. Hawkes; Dean C. Barratt (IPCAI, 2010)

Deformable Vessel-Based Registration Using Landmark-Guided Coherent Point Drift. - Yipeng Hu; Erik-Jan Rijkhorst; Richard Manber; David J. Hawkes; Dean C. Barratt (MIAR, 2010)

Effects of Respiratory Liver Motion on Heating for Gated and Model-Based Motion-Compensated High-Intensity Focused Ultrasound Ablation. - Erik-Jan Rijkhorst; Ian Rivens; Gail ter Haar; David J. Hawkes; Dean C. Barratt (MICCAI (1), 2011)

Modelling Prostate Motion for Data Fusion During Image-Guided Interventions. - Yipeng Hu; Timothy J. Carter; Hashim Uddin Ahmed; Mark Emberton; Clare Allen; David J. Hawkes; Dean C. Barratt (IEEE Trans. Medical Imaging, 2011)

Estimating and resolving uncertainty in cardiac respiratory motion modelling. - Devis Peressutti; Erik-Jan Rijkhorst; Dean C. Barratt; Graeme P. Penney; Andy P. King (ISBI, 2012)

MR to ultrasound registration for image-guided prostate interventions. - Yipeng Hu; Hashim Uddin Ahmed; Zeike A. Taylor; Clare Allen; Mark Emberton; David J. Hawkes; Dean C. Barratt (Medical Image Anal., 2012)

Study on liver blood vessel movement during breathing cycle. - Rahul Prasanna Kumar; Erik-Jan Rijkhorst; Oliver M. Geier; Dean C. Barratt; Ole Jakob Elle (CVCS, 2013)

Fully automated prostate magnetic resonance imaging and transrectal ultrasound fusion via a probabilistic registration metric. - Rachel Sparks; B. Nicolas Bloch; Ernest J. Feleppa; Dean C. Barratt; Anant Madabhushi (Image-Guided Procedures, 2013)

Surface-based prostate registration with biomechanical regularization. - Wendy J. M. van de Ven; Yipeng Hu; Jelle O. Barentsz; Nico Karssemeijer; Dean C. Barratt; Henkjan J. Huisman (Image-Guided Procedures, 2013)

A novel Bayesian respiratory motion model to estimate and resolve uncertainty in image-guided cardiac interventions. - Devis Peressutti; Graeme P. Penney; Richard James Housden; Christoph Kolbitsch; Alberto Gómez 002; Erik-Jan Rijkhorst; Dean C. Barratt; Kawal S. Rhode; Andrew P. King (Medical Image Anal., 2013)

A hybrid biomechanical model-based image registration method for sliding objects. - Lianghao Han; David J. Hawkes; Dean C. Barratt (Image Processing, 2014)

Spatially aware expectation maximization (SpAEM): application to prostate TRUS segmentation. - Mahdi Orooji; Rachel Sparks; B. Nicolas Bloch; Ernest J. Feleppa; Dean C. Barratt; Anant Madabhushi (Image Processing, 2014)

Information processing in computer-assisted interventions: 4th international conference, 2013. - Dean C. Barratt; Pierre Jannin; Gabor Fichtinger; Stephane Cotin (Int. J. Comput. Assist. Radiol. Surg., 2014)

Evaluation of prostate segmentation algorithms for MRI: The PROMISE12 challenge. - Geert Litjens 001; Robert Toth; Wendy J. M. van de Ven; Caroline Hoeks; Sjoerd Kerkstra; Bram van Ginneken; Graham Vincent; Gwenaël Guillard; Neil Birbeck; Jindang Zhang; Robin Strand; Filip Malmberg; et al. (Medical Image Anal., 2014)

A Nonlinear Biomechanical Model Based Registration Method for Aligning Prone and Supine MR Breast Images. - Lianghao Han; John H. Hipwell; Björn Eiben; Dean C. Barratt; Marc Modat; Sébastien Ourselin; David J. Hawkes (IEEE Trans. Medical Imaging, 2014)

Statistical Power in Image Segmentation: Relating Sample Size to Reference Standard Quality. - Eli Gibson; Henkjan J. Huisman; Dean C. Barratt (MICCAI (3), 2015)

Locally rigid, vessel-based registration for laparoscopic liver surgery. - Yi Song; Johannes Totz; Steve Thompson; Stian Flage Johnsen; Dean C. Barratt; Crispin Schneider; Kurinchi Gurusamy; Brian R. Davidson; Sébastien Ourselin; David J. Hawkes; Matthew J. Clarkson (Int. J. Comput. Assist. Radiol. Surg., 2015)

Population-based prediction of subject-specific prostate deformation for MR-to-ultrasound image registration. - Yipeng Hu; Eli Gibson; Hashim Uddin Ahmed; Caroline M. Moore; Mark Emberton; Dean C. Barratt (Medical Image Anal., 2015)

Assessment of Electromagnetic Tracking Accuracy for Endoscopic Ultrasound. - Ester Bonmati; Yipeng Hu; Kurinchi Gurusamy; Brian R. Davidson; Stephen P. Pereira; Matthew J. Clarkson; Dean C. Barratt (CARE@MICCAI, 2016)

2D-3D Registration Accuracy Estimation for Optimised Planning of Image-Guided Pancreatobiliary Interventions. - Yipeng Hu; Ester Bonmati; Eli Gibson; John H. Hipwell; David J. Hawkes; Steven Bandula; Stephen P. Pereira; Dean C. Barratt (MICCAI (1), 2016)

Impact of region contouring variability on image-based focal therapy evaluation. - Eli Gibson; Ian A. Donaldson; Taimur T. Shah; Yipeng Hu; Hashim Uddin Ahmed; Dean C. Barratt (Image-Guided Procedures, 2016)

Towards Image-Guided Pancreas and Biliary Endoscopy: Automatic Multi-organ Segmentation on Abdominal CT with Dense Dilated Networks. - Eli Gibson; Francesco Giganti; Yipeng Hu; Ester Bonmati; Steve Bandula; Kurinchi Gurusamy; Brian R. Davidson; Stephen P. Pereira; Matthew J. Clarkson; Dean C. Barratt (MICCAI (1), 2017)

Freehand Ultrasound Image Simulation with Spatially-Conditioned Generative Adversarial Networks. - Yipeng Hu; Eli Gibson; Li-Lin Lee; Weidi Xie; Dean C. Barratt; Tom Vercauteren; J. Alison Noble (CMMI/RAMBO/SWITCH@MICCAI, 2017)

Intraoperative Organ Motion Models with an Ensemble of Conditional Generative Adversarial Networks. - Yipeng Hu; Eli Gibson; Tom Vercauteren; Hashim Uddin Ahmed; Mark Emberton; Caroline M. Moore; J. Alison Noble; Dean C. Barratt (MICCAI (2), 2017)

Deep residual networks for automatic segmentation of laparoscopic videos of the liver. - Eli Gibson; Maria R. Robu; Stephen A. Thompson; Eddie Edwards; Crispin Schneider; Kurinchi Gurusamy; Brian R. Davidson; David J. Hawkes; Dean C. Barratt; Matthew J. Clarkson (Image-Guided Procedures, 2017)

Breathing motion compensated registration of laparoscopic liver ultrasound to CT. - João Ramalhinho; Maria Robu; Stephen A. Thompson; Philip J. Edwards; Crispin Schneider; Kurinchi Gurusamy; David J. Hawkes; Brian R. Davidson; Dean C. Barratt; Matthew J. Clarkson (Image-Guided Procedures, 2017)

NiftyNet: a deep-learning platform for medical imaging. - Eli Gibson; Wenqi Li 001; Carole H. Sudre; Lucas Fidon; Dzhoshkun I. Shakir; Guotai Wang; Zach Eaton-Rosen; Robert J. Gray; Tom Doel; Yipeng Hu; Tom Whyntie; Parashkev Nachev; et al. (CoRR, 2017)

Label-driven weakly-supervised learning for multimodal deformable image registration. - Yipeng Hu; Marc Modat; Eli Gibson; Nooshin Ghavami; Ester Bonmati; Caroline M. Moore; Mark Emberton; J. Alison Noble; Dean C. Barratt; Tom Vercauteren (CoRR, 2017)

Automatic segmentation method of pelvic floor levator hiatus in ultrasound using a self-normalising neural network. - Ester Bonmati; Yipeng Hu; Nikhil Sindhwani; Hans Peter Dietz; Jan D'hooge; Dean C. Barratt; Jan Deprest; Tom Vercauteren (CoRR, 2017)

Designing image segmentation studies: Statistical power, sample size and reference standard quality. - Eli Gibson; Yipeng Hu; Henkjan J. Huisman; Dean C. Barratt (Medical Image Anal., 2017)

A hybrid patient-specific biomechanical model based image registration method for the motion estimation of lungs. - Lianghao Han; Hua Dong; Jamie R. McClelland; Liangxiu Han; David J. Hawkes; Dean C. Barratt (Medical Image Anal., 2017)

Development and Phantom Validation of a 3-D-Ultrasound-Guided System for Targeting MRI-Visible Lesions During Transrectal Prostate Biopsy. - Yipeng Hu; Veeru Kasivisvanathan; Lucy A. M. Simmons; Matthew J. Clarkson; Stephen A. Thompson; Taimur T. Shah; Hashim Uddin Ahmed; Shonit Punwani; David J. Hawkes; Mark Emberton; Caroline M. Moore; Dean C. Barratt (IEEE Trans. Biomed. Eng., 2017)

Label-driven weakly-supervised learning for multimodal deformarle image registration. - Yipeng Hu; Marc Modat; Eli Gibson; Nooshin Ghavami; Ester Bonmati; Caroline M. Moore; Mark Emberton; J. Alison Noble; Dean C. Barratt; Tom Vercauteren (ISBI, 2018)

Inter-site Variability in Prostate Segmentation Accuracy Using Deep Learning. - Eli Gibson; Yipeng Hu; Nooshin Ghavami; Hashim Uddin Ahmed; Caroline M. Moore; Mark Emberton; Henkjan J. Huisman; Dean C. Barratt (MICCAI (4), 2018)

Adversarial Deformation Regularization for Training Image Registration Neural Networks. - Yipeng Hu; Eli Gibson; Nooshin Ghavami; Ester Bonmati; Caroline M. Moore; Mark Emberton; Tom Vercauteren; J. Alison Noble; Dean C. Barratt (MICCAI (1), 2018)

Technical note: automatic segmentation method of pelvic floor levator hiatus in ultrasound using a self-normalising neural network. - Ester Bonmati; Yipeng Hu; Nikhil Sindhwani; Hans Peter Dietz; Jan D'hooge; Dean C. Barratt; Jan Deprest; Tom Vercauteren (Image-Guided Procedures, 2018)

Automatic slice segmentation of intraoperative transrectal ultrasound images using convolutional neural networks. - Nooshin Ghavami; Yipeng Hu; Ester Bonmati; Rachael Rodell; Eli Gibson; Caroline M. Moore; Dean C. Barratt (Image-Guided Procedures, 2018)

Determination of optimal ultrasound planes for the initialisation of image registration during endoscopic ultrasound-guided procedures. - Ester Bonmati; Yipeng Hu; Eli Gibson; Laura Uribarri; Geri Keane; Kurinchi Gurusamy; Brian R. Davidson; Stephen P. Pereira; Matthew J. Clarkson; Dean C. Barratt (Int. J. Comput. Assist. Radiol. Surg., 2018)

A pre-operative planning framework for global registration of laparoscopic ultrasound to CT images. - João Ramalhinho; Maria R. Robu; Stephen A. Thompson; Kurinchi Gurusamy; Brian R. Davidson; David J. Hawkes; Dean C. Barratt; Matthew J. Clarkson (Int. J. Comput. Assist. Radiol. Surg., 2018)

NiftyNet: a deep-learning platform for medical imaging. - Eli Gibson; Wenqi Li 001; Carole H. Sudre; Lucas Fidon; Dzhoshkun I. Shakir; Guotai Wang; Zach Eaton-Rosen; Robert J. Gray; Tom Doel; Yipeng Hu; Tom Whyntie; Parashkev Nachev; et al. (Comput. Methods Programs Biomed., 2018)

Weakly-supervised convolutional neural networks for multimodal image registration. - Yipeng Hu; Marc Modat; Eli Gibson; Wenqi Li 001; Nooshin Ghavami; Ester Bonmati; Guotai Wang; Steven Bandula; Caroline M. Moore; Mark Emberton; Sébastien Ourselin; J. Alison Noble; et al. (Medical Image Anal., 2018)

Automatic Multi-Organ Segmentation on Abdominal CT With Dense V-Networks. - Eli Gibson; Francesco Giganti; Yipeng Hu; Ester Bonmati; Steve Bandula; Kurinchi Gurusamy; Brian R. Davidson; Stephen P. Pereira; Matthew J. Clarkson; Dean C. Barratt (IEEE Trans. Medical Imaging, 2018)

Conditional Segmentation in Lieu of Image Registration. - Yipeng Hu; Eli Gibson; Dean C. Barratt; Mark Emberton; J. Alison Noble; Tom Vercauteren (MICCAI (2), 2019)

Registration of Untracked 2D Laparoscopic Ultrasound Liver Images to CT Using Content-Based Retrieval and Kinematic Priors. - João Ramalhinho; Henry F. J. Tregidgo; Moustafa Allam; Nikolina Travlou; Kurinchi Gurusamy; Brian R. Davidson; David J. Hawkes; Dean C. Barratt; Matthew J. Clarkson (SUSI/PIPPI@MICCAI, 2019)

Automatic segmentation of prostate MRI using convolutional neural networks: Investigating the impact of network architecture on the accuracy of volume measurement and MRI-ultrasound registration. - Nooshin Ghavami; Yipeng Hu; Eli Gibson; Ester Bonmati; Mark Emberton; Caroline M. Moore; Dean C. Barratt (Medical Image Anal., 2019)

Multimodality Biomedical Image Registration Using Free Point Transformer Networks. - Zachary M. C. Baum; Yipeng Hu; Dean C. Barratt (ASMUS/PIPPI@MICCAI, 2020)

Assisted Probe Positioning for Ultrasound Guided Radiotherapy Using Image Sequence Classification. - Alex Grimwood; Helen McNair; Yipeng Hu; Ester Bonmati; Dean C. Barratt; Emma J. Harris (MICCAI (3), 2020)

Prostate Motion Modelling Using Biomechanically-Trained Deep Neural Networks on Unstructured Nodes. - Shaheer U. Saeed; Zeike A. Taylor; Mark A. Pinnock; Mark Emberton; Dean C. Barratt; Yipeng Hu (MICCAI (4), 2020)

Longitudinal Image Registration with Temporal-Order and Subject-Specificity Discrimination. - Qianye Yang; Yunguan Fu; Francesco Giganti; Nooshin Ghavami; Qingchao Chen; J. Alison Noble; Tom Vercauteren; Dean C. Barratt; Yipeng Hu (MICCAI (3), 2020)

DeepReg: a deep learning toolkit for medical image registration. - Yunguan Fu; Nina Montaña Brown; Shaheer U. Saeed; Adrià Casamitjana; Zachary Baum; Rémi Delaunay; Qianye Yang; Alexander Grimwood; Zhe Min; Stefano B. Blumberg; Juan Eugenio Iglesias; Dean C. Barratt; et al. (J. Open Source Softw., 2020)

DeepReg: a deep learning toolkit for medical image registration. - Yunguan Fu; Nina Montaña Brown; Shaheer U. Saeed; Adrià Casamitjana; Zachary M. C. Baum; Rémi Delaunay; Qianye Yang; Alexander Grimwood; Zhe Min; Stefano B. Blumberg; Juan Eugenio Iglesias; Dean C. Barratt; et al. (Zenodo, 2020)

Learning Image Quality Assessment by Reinforcing Task Amenable Data Selection. - Shaheer U. Saeed; Yunguan Fu; Zachary M. C. Baum; Qianye Yang; Mirabela Rusu; Richard E. Fan; Geoffrey A. Sonn; Dean C. Barratt; Yipeng Hu (IPMI, 2021)

Morphological Change Forecasting For Prostate Glands Using Feature-Based Registration And Kernel Density Extrapolation. - Qianye Yang; Tom Vercauteren; Yunguan Fu; Francesco Giganti; Nooshin Ghavami; Vasilis Stavrinides; Caroline M. Moore; Matthew J. Clarkson; Dean C. Barratt; Yipeng Hu (ISBI, 2021)

Endoscopic Ultrasound Image Synthesis Using a Cycle-Consistent Adversarial Network. - Alexander Grimwood; João Ramalhinho; Zachary M. C. Baum; Nina Montaña Brown; Gavin J. Johnson; Yipeng Hu; Matthew J. Clarkson; Stephen P. Pereira; Dean C. Barratt; Ester Bonmati (ASMUS@MICCAI, 2021)

Adaptable Image Quality Assessment Using Meta-Reinforcement Learning of Task Amenability. - Shaheer U. Saeed; Yunguan Fu; Vasilis Stavrinides; Zachary M. C. Baum; Qianye Yang; Mirabela Rusu; Richard E. Fan; Geoffrey A. Sonn; J. Alison Noble; Dean C. Barratt; Yipeng Hu (ASMUS@MICCAI, 2021)

Image quality assessment for closed-loop computer-assisted lung ultrasound. - Zachary M. C. Baum; Ester Bonmati; Lorenzo Cristoni; Andrew Walden; Ferran Prados; Baris Kanber; Dean C. Barratt; David J. Hawkes; Geoff J. M. Parker; Claudia A. M. Gandini Wheeler-Kingshott; Yipeng Hu (Image-Guided Procedures, 2021)

End-to-end forecasting of needle trajectory in percutaneous ablation. - Mark A. Pinnock; Yipeng Hu; Steve Bandula; Dean C. Barratt (Image-Guided Procedures, 2021)

Combined 3D super-resolution, de-noising and partial volume correction for percutaneous ablation. - Mark A. Pinnock; Yipeng Hu; Steve Bandula; Dean C. Barratt (Image Processing, 2021)

Controlling False Positive/Negative Rates for Deep-Learning-Based Prostate Cancer Detection on Multiparametric MR Images. - Zhe Min; Fernando J. Bianco; Qianye Yang; Rachael Rodell; Wen Yan; Dean C. Barratt; Yipeng Hu (MIUA, 2021)

Voice-assisted Image Labelling for Endoscopic Ultrasound Classification using Neural Networks. - Ester Bonmati; Yipeng Hu; Alexander Grimwood; Gavin J. Johnson; George Goodchild; Margaret G. Keane; Kurinchi Gurusamy; Brian R. Davidson; Matthew J. Clarkson; Stephen P. Pereira; Dean C. Barratt (CoRR, 2021)

Real-time multimodal image registration with partial intraoperative point-set data. - Zachary M. C. Baum; Yipeng Hu; Dean C. Barratt (Medical Image Anal., 2021)

FEW-SHOT Image Segmentation for Cross-Institution Male Pelvic Organs Using Registration-Assisted Prototypical Learning. - Yiwen Li; Yunguan Fu; Qianye Yang; Zhe Min; Wen Yan; Henkjan J. Huisman; Dean C. Barratt; Victor Adrian Prisacariu; Yipeng Hu (ISBI, 2022)

Meta-registration: Learning Test-Time Optimization for Single-Pair Image Registration. - Zachary M. C. Baum; Yipeng Hu; Dean C. Barratt (ASMUS@MICCAI, 2022)

Learning Generalized Non-rigid Multimodal Biomedical Image Registration from Generic Point Set Data. - Zachary M. C. Baum; Tamas Ungi; Christopher Schlenger; Yipeng Hu; Dean C. Barratt (ASMUS@MICCAI, 2022)

Strategising Template-Guided Needle Placement for MR-targeted Prostate Biopsy. - Iani J. M. B. Gayo; Shaheer U. Saeed; Dean C. Barratt; Matthew J. Clarkson; Yipeng Hu (CaPTion@MICCAI, 2022)

Collaborative Quantization Embeddings for Intra-subject Prostate MR Image Registration. - Ziyi Shen; Qianye Yang; Yuming Shen; Francesco Giganti; Vasilis Stavrinides; Richard E. Fan; Caroline M. Moore; Mirabela Rusu; Geoffrey A. Sonn; Philip H. S. Torr; Dean C. Barratt; Yipeng Hu (MICCAI (6), 2022)

The Impact of Using Voxel-Level Segmentation Metrics on Evaluating Multifocal Prostate Cancer Localisation. - Wen Yan; Qianye Yang; Tom Syer; Zhe Min; Shonit Punwani; Mark Emberton; Dean C. Barratt; Bernard Chiu; Yipeng Hu (AMAI@MICCAI, 2022)

Image quality assessment by overlapping task-specific and task-agnostic measures: application to prostate multiparametric MR images for cancer segmentation. - Shaheer U. Saeed; Wen Yan; Yunguan Fu; Francesco Giganti; Qianye Yang; Zachary M. C. Baum; Mirabela Rusu; Richard E. Fan; Geoffrey A. Sonn; Mark Emberton; Dean C. Barratt; Yipeng Hu (CoRR, 2022)

Image quality assessment for machine learning tasks using meta-reinforcement learning. - Shaheer U. Saeed; Yunguan Fu; Vasilis Stavrinides; Zachary M. C. Baum; Qianye Yang; Mirabela Rusu; Richard E. Fan; Geoffrey A. Sonn; J. Alison Noble; Dean C. Barratt; Yipeng Hu (Medical Image Anal., 2022)

Domain generalization for prostate segmentation in transrectal ultrasound images: A multi-center study. - Sulaiman Vesal; Iani J. M. B. Gayo; Indrani Bhattacharya; Shyam Natarajan; Leonard S. Marks; Dean C. Barratt; Richard E. Fan; Yipeng Hu; Geoffrey A. Sonn; Mirabela Rusu (Medical Image Anal., 2022)

Voice-Assisted Image Labeling for Endoscopic Ultrasound Classification Using Neural Networks. - Ester Bonmati; Yipeng Hu; Alexander Grimwood; Gavin J. Johnson; George Goodchild; Margaret G. Keane; Kurinchi Gurusamy; Brian R. Davidson; Matthew J. Clarkson; Stephen P. Pereira; Dean C. Barratt (IEEE Trans. Medical Imaging, 2022)

Cross-Modality Image Registration Using a Training-Time Privileged Third Modality. - Qianye Yang; David Atkinson; Yunguan Fu; Tom Syer; Wen Yan; Shonit Punwani; Matthew J. Clarkson; Dean C. Barratt; Tom Vercauteren; Yipeng Hu (IEEE Trans. Medical Imaging, 2022)

Cross-institution Male Pelvic Structures. - Yiwen Li; Yunguan Fu; Iani J. M. B. Gayo; Qianye Yang; Zhe Min; Shaheer U. Saeed; Wen Yan; Yipei Wang; J. Alison Noble; Mark Emberton; Matthew J. Clarkson; Henkjan Huisman; et al. (Zenodo, 2022)

Freehand ultrasound without external trackers. - Qi Li 030; Ziyi Shen; Qian Li 036; Dean C. Barratt; Thomas Dowrick; Matthew J. Clarkson; Tom Vercauteren; Yipeng Hu (Zenodo, 2022)

Non-rigid Medical Image Registration using Physics-informed Neural Networks. - Zhe Min; Zachary M. C. Baum; Shaheer U. Saeed; Mark Emberton; Dean C. Barratt; Zeike A. Taylor; Yipeng Hu (IPMI, 2023)

Trackerless Freehand Ultrasound with Sequence Modelling and Auxiliary Transformation Over Past and Future Frames. - Qi Li 030; Ziyi Shen; Qian Li 036; Dean C. Barratt; Thomas Dowrick; Matthew J. Clarkson; Tom Vercauteren; Yipeng Hu (ISBI, 2023)

Privileged Anatomical and Protocol Discrimination in Trackerless 3D Ultrasound Reconstruction. - Qi Li 030; Ziyi Shen; Qian Li 036; Dean C. Barratt; Thomas Dowrick; Matthew J. Clarkson; Tom Vercauteren; Yipeng Hu (ASMUS@MICCAI, 2023)

Bi-parametric prostate MR image synthesis using pathology and sequence-conditioned stable diffusion. - Shaheer U. Saeed; Tom Syer; Wen Yan; Qianye Yang; Mark Emberton; Shonit Punwani; Matthew John Clarkson; Dean C. Barratt; Yipeng Hu (MIDL, 2023)

Boundary-RL: Reinforcement Learning for Weakly-Supervised Prostate Segmentation in TRUS Images. - Weixi Yi; Vasilis Stavrinides; Zachary M. C. Baum; Qianye Yang; Dean C. Barratt; Matthew J. Clarkson; Yipeng Hu; Shaheer U. Saeed (MLMI@MICCAI (1), 2023)

Multi-phase synthetic contrast enhancement in interventional computed tomography for guiding renal cryotherapy. - Mark A. Pinnock; Yipeng Hu; Steve Bandula; Dean C. Barratt (Int. J. Comput. Assist. Radiol. Surg., 2023)

Meta-Learning Initializations for Interactive Medical Image Registration. - Zachary M. C. Baum; Yipeng Hu; Dean C. Barratt (IEEE Trans. Medical Imaging, 2023)

Prototypical few-shot segmentation for cross-institution male pelvic structures with spatial registration. - Yiwen Li; Yunguan Fu; Iani J. M. B. Gayo; Qianye Yang; Zhe Min; Shaheer U. Saeed; Wen Yan; Yipei Wang; J. Alison Noble; Mark Emberton; Matthew J. Clarkson; Henkjan Huisman; et al. (Medical Image Anal., 2023)

Weakly Supervised Localisation of Prostate Cancer Using Reinforcement Learning for Bi-Parametric MR Images. - Martynas Pocius; Wen Yan; Dean C. Barratt; Mark Emberton; Matthew J. Clarkson; Yipeng Hu; Shaheer U. Saeed (ISBI, 2024)

One Registration is Worth Two Segmentations. - Shiqi Huang; Tingfa Xu; Ziyi Shen; Shaheer Ullah Saeed; Wen Yan; Dean C. Barratt; Yipeng Hu (MICCAI (12), 2024)

Nonrigid Reconstruction of Freehand Ultrasound Without a Tracker. - Qi Li 030; Ziyi Shen; Qianye Yang; Dean C. Barratt; Matthew J. Clarkson; Tom Vercauteren; Yipeng Hu (MICCAI (4), 2024)

Biomechanics-Informed Non-rigid Medical Image Registration and its Inverse Material Property Estimation with Linear and Nonlinear Elasticity. - Zhe Min; Zachary M. C. Baum; Shaheer U. Saeed; Mark Emberton; Dean C. Barratt; Zeike A. Taylor; Yipeng Hu (MICCAI (2), 2024)

Poisson Ordinal Network for Gleason Group Estimation Using Bi-Parametric MRI. - Yinsong Xu 002; Yipei Wang; Ziyi Shen; Iani J. M. B. Gayo; Natasha Thorley; Shonit Punwani; Aidong Men; Dean C. Barratt; Qingchao Chen; Yipeng Hu (MICCAI (5), 2024)

Semi-weakly-supervised neural network training for medical image registration. - Yiwen Li; Yunguan Fu; Iani J. M. B. Gayo; Qianye Yang; Zhe Min; Shaheer U. Saeed; Wen Yan; Yipei Wang; J. Alison Noble; Mark Emberton; Matthew J. Clarkson; Dean C. Barratt; et al. (CoRR, 2024)

Competing for pixels: a self-play algorithm for weakly-supervised segmentation. - Shaheer U. Saeed; Shiqi Huang; João Ramalhinho; Iani J. M. B. Gayo; Nina Montaña Brown; Ester Bonmati; Stephen P. Pereira; Brian R. Davidson; Dean C. Barratt; Matthew J. Clarkson; Yipeng Hu (CoRR, 2024)

SAMReg: SAM-enabled Image Registration with ROI-based Correspondence. - Shiqi Huang; Tingfa Xu; Ziyi Shen; Shaheer Ullah Saeed; Wen Yan; Dean C. Barratt; Yipeng Hu (CoRR, 2024)

Active learning using adaptable task-based prioritisation. - Shaheer U. Saeed; João Ramalhinho; Mark A. Pinnock; Ziyi Shen; Yunguan Fu; Nina Montaña Brown; Ester Bonmati; Dean C. Barratt; Stephen P. Pereira; Brian R. Davidson; Matthew J. Clarkson; Yipeng Hu (Medical Image Anal., 2024)

Combiner and HyperCombiner networks: Rules to combine multimodality MR images for prostate cancer localisation. - Wen Yan; Bernard Chiu; Ziyi Shen; Qianye Yang; Tom Syer; Zhe Min; Shonit Punwani; Mark Emberton; David Atkinson; Dean C. Barratt; Yipeng Hu (Medical Image Anal., 2024)

Long-Term Dependency for 3D Reconstruction of Freehand Ultrasound Without External Tracker. - Qi Li 030; Ziyi Shen; Qian Li 036; Dean C. Barratt; Thomas Dowrick; Matthew J. Clarkson; Tom Vercauteren; Yipeng Hu (IEEE Trans. Biomed. Eng., 2024)

The distinct roles of reinforcement learning between pre-procedure and intra-procedure planning for prostate biopsy. - Iani J. M. B. Gayo; Shaheer U. Saeed; Ester Bonmati; Dean C. Barratt; Matthew J. Clarkson; Yipeng Hu (Int. J. Comput. Assist. Radiol. Surg., 2024)

Tell2Reg: Establishing Spatial Correspondence between Images by the Same Language Prompts. - Wen Yan; Qianye Yang; Shiqi Huang; Yipei Wang; Shonit Punwani; Mark Emberton; Vasilis Stavrinides; Yipeng Hu; Dean C. Barratt (ISBI, 2025)

T2-Only Prostate Cancer Prediction by Meta-Learning from BI-Parametric MR Imaging. - Weixi Yi; Yipei Wang; Natasha Thorley; Alexander Ng; Shonit Punwani; Veeru Kasivisvanathan; Dean C. Barratt; Shaheer U. Saeed; Yipeng Hu (ISBI, 2025)

Segmentation versus detection: Development and evaluation of deep learning models for prostate imaging reporting and data system lesions localisation on Bi-parametric prostate magnetic resonance imaging. - Zhe Min; Fernando J. Bianco; Qianye Yang; Wen Yan; Ziyi Shen; David Cohen; Rachael Rodell; Dean C. Barratt; Yipeng Hu (CAAI Trans. Intell. Technol., 2025)

Competing for Pixels: A Self-Play Algorithm for Weakly-Supervised Semantic Segmentation. - Shaheer U. Saeed; Shiqi Huang; João Ramalhinho; Iani J. M. B. Gayo; Nina Montaña Brown; Ester Bonmati; Stephen P. Pereira; Brian R. Davidson; Dean C. Barratt; Matthew J. Clarkson; Yipeng Hu (IEEE Trans. Pattern Anal. Mach. Intell., 2025)

TUS-REC2024: A Challenge to Reconstruct 3D Freehand Ultrasound Without External Tracker. - Qi Li 030; Shaheer U. Saeed; Yuliang Huang; Mingyuan Luo; Zhongnuo Yan; Jiongquan Chen; Xin Yang 009; Dong Ni 001; Nektarios Winter; Phuc Nguyen; Lucas Steinberger; Caelan Haney; et al. (CoRR, 2025)