In silico Identification of Candidate Drug and Vaccine Targets from Various Pathways in Neisseria gonorrhoeae. - Debmalya Barh; Anil Kumar (Silico Biol., 2009)

miReg: a resource for microRNA regulation. - Debmalya Barh; Dattatraya Bhat; Cedric Viero (J. Integr. Bioinform., 2010)

Determining miRNA-disease associations using bipartite graph modelling. - Joseph Nalluri; Bhanu K. Kamapantula; Preetam Ghosh; Debmalya Barh; Neha Jain; Lucky Juneja; Neha Barve (BCB, 2013)

Determining influential miRNA targets in diseases using influence diffusion model. - Joseph Nalluri; Pratip Rana; Vasco Ariston de Carvalho Azevedo; Debmalya Barh; Preetam Ghosh (BCB, 2015)

SIMBA: a web tool for managing bacterial genome assembly generated by Ion PGM sequencing technology. - Diego C. B. Mariano; Felipe L. Pereira; Edgar L. Aguiar; Letícia de Castro Oliveira; Leandro Benevides; Luis Guimarães; Edson Luiz Folador; Thiago J. Sousa; Preetam Ghosh; Debmalya Barh; Henrique C. P. Figueiredo; Artur Silva; et al. (BMC Bioinform., 2016)

In silico identification of essential proteins in Corynebacterium pseudotuberculosis based on protein-protein interaction networks. - Edson Luiz Folador; Paulo Vinícius Sanches Daltro de Carvalho; Wanderson Marques Silva; Rafaela Salgado Ferreira; Artur Silva; M. Michael Gromiha; Preetam Ghosh; Debmalya Barh; Vasco Ariston de Carvalho Azevedo; Richard Röttger (BMC Syst. Biol., 2016)

Bioinformatics strategies for identification of cancer biomarkers and targets in pathogens associated with cancer - Debmalya Barh (2017)

Protein-Protein Interactions: An Overview. - Edson Luiz Folador; Sandeep Tiwari; Camila E. Da Paz Barbosa; Syed B. Jamal; Marco Da Costa Schulze; Debmalya Barh; Vasco Ariston de Carvalho Azevedo (Encyclopedia of Bioinformatics and Computational Biology (2), 2019)

Multi-omics-based identification of SARS-CoV-2 infection biology and candidate drugs against COVID-19. - Debmalya Barh; Sandeep Tiwari; Marianna E. Weener; Vasco Ariston de Carvalho Azevedo; Aristóteles Góes-Neto; M. Michael Gromiha; Preetam Ghosh (Comput. Biol. Medicine, 2020)

A unique view of SARS-CoV-2 through the lens of ORF8 protein. - Sarif Sk. Hassan; Alaa A. A. Aljabali; Pritam Kumar Panda; Shinjini Ghosh; Diksha Attrish; Pabitra Pal Choudhury; Murat Seyran; Damiano Pizzol; Parise Adadi; Tarek Mohamed Abd El-Aziz; Antonio Soares; Ramesh Kandimalla; et al. (Comput. Biol. Medicine, 2021)

Modular network inference between miRNA-mRNA expression profiles using weighted co-expression network analysis. - Nisar Wani; Debmalya Barh; Khalid Raza (J. Integr. Bioinform., 2021)

An immunoinformatics-based designed multi-epitope candidate vaccine (mpme-VAC/STV-1) against Mycoplasma pneumoniae. - Thaís Cristina Vilela Rodrigues; Arun Kumar Jaiswal; Marcela Rezende Lemes; Marcos Vinícius da Silva; Helioswilton Sales-Campos; Luiz Carlos Júnior Alcântara; Sthephane Fraga de Oliveira Tosta; Rodrigo Bentes Kato; Khalid J. Alzahrani; Debmalya Barh; Vasco Ariston de Carvalho Azevedo; Sandeep Tiwari; et al. (Comput. Biol. Medicine, 2022)

PanViTa: Pan Virulence and resisTance analysis. - Diego Lucas Neres Rodrigues; Juan Carlos Ariute; Francielly Morais Rodrigues da Costa; Ana Maria Benko-Iseppon; Debmalya Barh; Vasco Ariston de Carvalho Azevedo; Flávia Figueira Aburjaile (Frontiers Bioinform., 2023)

SARS-CoV-2 NSP14 governs mutational instability and assists in making new SARS-CoV-2 variants. - Sk. Sarif Hassan; Tanishta Bhattacharya; Debaleena Nawn; Ishana Jha; Pallab Basu; Elrashdy M. Redwan; Kenneth Lundstrom; Debmalya Barh; Bruno Silva Andrade; Murtaza M. Tambuwala; Alaa A. A. Aljabali; Altijana Hromic-Jahjefendic; et al. (Comput. Biol. Medicine, 2024)