Interface of Apoptotic Protein Complexes Has Distinct Properties. - Pralay Mitra; Riddhiman Dhar; Debnath Pal (Silico Biol., 2009)

Using correlated parameters for improved ranking of protein-protein docking decoys. - Pralay Mitra; Debnath Pal (J. Comput. Chem., 2011)

WebGeSTer DB - a transcription terminator database. - Anirban Mitra; Anil K. Kesarwani; Debnath Pal; Valakunja Nagaraja (Nucleic Acids Res., 2011)

PRUNE and PROBE - two modular web services for protein-protein docking. - Pralay Mitra; Debnath Pal (Nucleic Acids Res., 2011)

AccuRA: Accurate alignment of short reads on scalable reconfigurable accelerators. - Santhi Natarajan; N. Krishna Kumar; Debnath Pal; S. K. Nandy 001 (SAMOS, 2016)

Pipeline for inferring protein function from dynamics using coarse-grained molecular mechanics forcefield. - Pratiti Bhadra; Debnath Pal (Comput. Biol. Medicine, 2017)

ReneGENE-Novo: Co-designed Algorithm-Architecture for Accelerated Preprocessing and Assembly of Genomic Short Reads. - Santhi Natarajan; N. Krishna Kumar; H. V. Anuchan; Debnath Pal; S. K. Nandy 001 (ARC, 2018)

ReneGENE-GI: Empowering Precision Genomics with FPGAs on HPCs. - Santhi Natarajan; N. Krishna Kumar; Debnath Pal; S. K. Nandy 001 (ARC, 2018)

Towards Accelerated Genome Informatics on Parallel HPC Platforms: The ReneGENE-GI Perspective. - Santhi Natarajan; N. Krishna Kumar; Debnath Pal; S. K. Nandy 001 (J. Signal Process. Syst., 2020)

MD DaVis: interactive data visualization of protein molecular dynamics. - Dibyajyoti Maity; Debnath Pal (Bioinform., 2022)

Prediction of Small Molecules Binding Site with RNA as a Target. - Subhasree Majumder; Debnath Pal (ICCCNT, 2024)

Combined analysis of somatic mutations and gene expression reveals nuclear speckles-associated enhanced stemness in gingivobuccal carcinoma under DNA damage response. - Sachendra Kumar; Tamasa De; Janavi Subramani; Annapoorni Rangarajan; Debnath Pal (Comput. Biol. Chem., 2025)

Challenges and recommendations for enhancing digital data protection in Indian Medical Research and Healthcare Sector. - Anubhuti Sood; Deepika Mishra; Varun Surya; Harpreet Singh; Rajesh Sundaresan; Debnath Pal; Raghu Dharmaraju; Rohit Satish; Shashwat Mishra; Nishant A. Chavan; Soham Mondal; Pavan Duggal; et al. (npj Digit. Medicine, 2025)

MIDAS: a technology-enabled hub-and-spoke system for the collection and dissemination of high-quality medical datasets in India. - Dibyajyoti Maity; Rohit Satish; Raghu Dharmaraju; Vijay Chandru; Rajesh Sundaresan; Harpreet Singh; Debnath Pal (BMC Medical Informatics Decis. Mak., 2025)