Mining ChIP-chip data for transcription factor and cofactor binding sites. - Andrew D. Smith; Pavel Sumazin; Debopriya Das; Michael Q. Zhang (ISMB (Supplement of Bioinformatics), 2005)

A Primer on Regression Methods for Decoding cis-Regulatory Logic. - Debopriya Das; Matteo Pellegrini; Joe W. Gray (PLoS Comput. Biol., 2009)