Inferring Host Gene Subnetworks Involved in Viral Replication. - Deborah Chasman; Brandi Gancarz; Linhui Hao; Michael Ferris 001; Paul Ahlquist; Mark Craven (PLoS Comput. Biol., 2014)

Multi-task consensus clustering of genome-wide transcriptomes from related biological conditions. - Zhen Niu; Deborah Chasman; Amie J. Eisfeld; Yoshihiro Kawaoka; Sushmita Roy (Bioinform., 2016)

Integrating Transcriptomic and Proteomic Data Using Predictive Regulatory Network Models of Host Response to Pathogens. - Deborah Chasman; Kevin B. Walters; Tiago J. S. Lopes; Amie J. Eisfeld; Yoshihiro Kawaoka; Sushmita Roy (PLoS Comput. Biol., 2016)

Network inference reveals novel connections in pathways regulating growth and defense in the yeast salt response. - Matthew E. MacGilvray; Evgenia Shishkova; Deborah Chasman; Michael Place; Anthony Gitter; Joshua J. Coon; Audrey P. Gasch (PLoS Comput. Biol., 2018)

Augmenting subnetwork inference with information extracted from the scientific literature. - Sid Kiblawi; Deborah Chasman; Amanda Henning; Eunju Park; Hoifung Poon; Michael Gould; Paul Ahlquist; Mark Craven (PLoS Comput. Biol., 2019)