Constructing Comparative Genome Maps with Unresolved Marker Order. - Debra Goldberg; Susan McCouch; Jon M. Kleinberg (Pacific Symposium on Biocomputing, 2002)

Assessing and Combining Reliability of Protein Interaction Sources. - Sonia M. Leach; Aaron Gabow; Lawrence Hunter; Debra Goldberg (Pacific Symposium on Biocomputing, 2007)

Improving protein function prediction methods with integrated literature data. - Aaron Gabow; Sonia M. Leach; William A. Baumgartner Jr.; Lawrence Hunter; Debra Goldberg (BMC Bioinform., 2008)

Reverse Engineering the Evolution of Protein Interaction Networks. - Todd A. Gibson; Debra Goldberg (Pacific Symposium on Biocomputing, 2009)

Questioning the Ubiquity of Neofunctionalization. - Todd A. Gibson; Debra Goldberg (PLoS Comput. Biol., 2009)

Improving evolutionary models of protein interaction networks. - Todd A. Gibson; Debra Goldberg (Bioinform., 2011)

A First Attempt to Bring Computational Biology into Advanced High School Biology Classrooms. - Suzanne Renick Gallagher; William Coon; Kristin Donley; Abby Scott; Debra Goldberg (PLoS Comput. Biol., 2011)

Engaging computer science in traditional education: the ECSITE project. - Debra Goldberg; Dirk Grunwald; Clayton H. Lewis; Jessica A. Feld; Sarah Hug (ITiCSE, 2012)

Clustering Coefficients in Protein Interaction Hypernetworks. - Suzanne Renick Gallagher; Debra S. Goldberg (BCB, 2013)

Evaluating theoretical models of protein interaction network evolution without seed graphs. - Todd A. Gibson; Debra S. Goldberg (BCB, 2013)

Beyond computer science: computational thinking across disciplines. - Amber Settle; Debra S. Goldberg; Valerie Barr (ITiCSE, 2013)

Addressing 21st century skills by embedding computer science in K-12 classes. - Debra Goldberg; Dirk Grunwald; Clayton Lewis; Jessica A. Feld; Kristin Donley; Odette Edbrooke (SIGCSE, 2013)

I'm Like You, Just Not In That Way: Tag Networks to Improve Collaborative Filtering. - Jason Boorn; Debra S. Goldberg (F1000Research, 2013)

Characterization of known protein complexes using k-connectivity and other topological measures. - Suzanne Renick Gallagher; Debra S. Goldberg (F1000Research, 2013)

Using 2-node hypergraph clustering coefficients to analyze disease-gene networks. - Suzanne Renick Gallagher; Micah Dombrower; Debra S. Goldberg (BCB, 2014)

Large highly connected clusters in protein-protein interaction networks. - Suzanne Renick Gallagher; Debra S. Goldberg (BCB, 2014)

E pluribus, plurima: the synergy of interdisciplinary class groups. - Debra S. Goldberg; Elizabeth K. White (SIGCSE, 2014)

The Topological Profile of a Model of Protein Network Evolution Can Direct Model Improvement. - Todd A. Gibson; Debra S. Goldberg (WABI, 2015)