Identification of Over-Represented Combinations of Transcription Factor Binding Sites in Sets of Co-Expressed Genes. - Shao-Shan Huang; Debra L. Fulton; David J. Arenillas; Paul Perco; Shannan J. Ho Sui; James R. Mortimer; Wyeth W. Wasserman (APBC, 2006)

Improving the specificity of high-throughput ortholog prediction. - Debra L. Fulton; Yvonne Y. Li; Matthew R. Laird; Benjamin G. S. Horsman; Fiona M. Roche; Fiona S. L. Brinkman (BMC Bioinform., 2006)

oPOSSUM: integrated tools for analysis of regulatory motif over-representation. - Shannan J. Ho Sui; Debra L. Fulton; David J. Arenillas; Andrew T. Kwon; Wyeth W. Wasserman (Nucleic Acids Res., 2007)