ncFANs: a web server for functional annotation of long non-coding RNAs. - Qi Liao; Hui Xiao; Dechao Bu; Chaoyong Xie; Ruoyu Miao; Haitao Luo; Guoguang Zhao; Kuntao Yu; Haitao Zhao; Geir Skogerbø; Runsheng Chen; Zhongdao Wu; et al. (Nucleic Acids Res., 2011)

NONCODE v3.0: integrative annotation of long noncoding RNAs. - Dechao Bu; Kuntao Yu; Silong Sun; Chaoyong Xie; Geir Skogerbø; Ruoyu Miao; Hui Xiao; Qi Liao; Haitao Luo; Guoguang Zhao; Haitao Zhao; Zhiyong Liu; et al. (Nucleic Acids Res., 2012)

NONCODEv4: exploring the world of long non-coding RNA genes. - Chaoyong Xie; Jiao Yuan; Hui Li 038; Ming Li; Guoguang Zhao; Dechao Bu; Weimin Zhu; Wei Wu 025; Runsheng Chen; Yi Zhao 013 (Nucleic Acids Res., 2014)

NONCODE 2016: an informative and valuable data source of long non-coding RNAs. - Yi Zhao 013; Hui Li 038; Shuangsang Fang; Yue Kang; Wei Wu 025; Yajing Hao 001; Ziyang Li; Dechao Bu; Ninghui Sun; Michael Q. Zhang; Runsheng Chen (Nucleic Acids Res., 2016)

Identification and function annotation of long intervening noncoding RNAs. - Haitao Luo; Dechao Bu; Liang Sun; Shuangsang Fang; Zhiyong Liu; Yi Zhao 013 (Briefings Bioinform., 2017)

SymMap: an integrative database of traditional Chinese medicine enhanced by symptom mapping. - Yang Wu; Feilong Zhang; Kuo Yang; Shuangsang Fang; Dechao Bu; Hui Li 038; Liang Sun; Hairuo Hu; Kuo Gao; Wei Wang 269; Xuezhong Zhou; Yi Zhao 013; et al. (Nucleic Acids Res., 2019)

Single-cell Long Non-coding RNA Landscape of T Cells in Human Cancer Immunity. - Haitao Luo; Dechao Bu; Lijuan Shao; Yang Li 126; Liang Sun; Ce Wang; Jing Wang 166; Wei Yang 053; Xiaofei Yang 010; Jun Dong; Yi Zhao 013; Furong Li (Genom. Proteom. Bioinform., 2021)

KOBAS-i: intelligent prioritization and exploratory visualization of biological functions for gene enrichment analysis. - Dechao Bu; Haitao Luo; Peipei Huo; Zhihao Wang; Shan Zhang; Zihao He; Yang Wu; Lianhe Zhao; Jingjia Liu; Jincheng Guo; Shuangsang Fang; Wanchen Cao; et al. (Nucleic Acids Res., 2021)

HERB: a high-throughput experiment- and reference-guided database of traditional Chinese medicine. - Shuangsang Fang; Lei Dong; Liu Liu; Jincheng Guo; Lianhe Zhao; Jiayuan Zhang; Dechao Bu; Xinkui Liu; Peipei Huo; Wanchen Cao; Qiongye Dong; Jiarui Wu; et al. (Nucleic Acids Res., 2021)

ncFANs v2.0: an integrative platform for functional annotation of non-coding RNAs. - Yuwei Zhang 007; Dechao Bu; Peipei Huo; Zhihao Wang; Hao Rong; Yanguo Li; Jingjia Liu; Meng Ye 010; Yang Wu; Zheng Jiang; Qi Liao; Yi Zhao 013 (Nucleic Acids Res., 2021)

NONCODEV6: an updated database dedicated to long non-coding RNA annotation in both animals and plants. - Lianhe Zhao; Jiajia Wang; Yanyan Li; Tingrui Song; Yang Wu; Shuangsang Fang; Dechao Bu; Hui Li 038; Liang Sun; Dong Pei; Yu Zheng 030; Jianqin Huang; et al. (Nucleic Acids Res., 2021)

Multi-modality artificial intelligence in digital pathology. - Yixuan Qiao; Lianhe Zhao; Chunlong Luo; Yufan Luo; Yang Wu; Shengtong Li; Dechao Bu; Yi Zhao 013 (Briefings Bioinform., 2022)

Biological knowledge graph-guided investigation of immune therapy response in cancer with graph neural network. - Lianhe Zhao; Xiaoning Qi; Yang Chen; Yixuan Qiao; Dechao Bu; Yang Wu; Yufan Luo; Sheng Wang; Rui Zhang; Yi Zhao 013 (Briefings Bioinform., 2023)

MiHATP:A Multi-hybrid Attention Super-Resolution Network for Pathological Image Based on Transformation Pool Contrastive Learning. - Zhufeng Xu; Jiaxin Qin; Chenhao Li; Dechao Bu; Yi Zhao 013 (MICCAI (7), 2024)

CIEC: Cross-tissue Immune Cell Type Enrichment and Expression Map Visualization for Cancer. - Jinhua He; Haitao Luo; Wei Wang 269; Dechao Bu; Zhengkai Zou; Haolin Wang; Hongzhen Tang; Zeping Han; Wenfeng Luo; Jian Shen; Fangmei Xie; Yi Zhao 013; et al. (Genom. Proteom. Bioinform., 2025)