The Landscape of the Prion Protein's Structural Response to Mutation Revealed by Principal Component Analysis of Multiple NMR Ensembles. - Deena M. A. Gendoo; Paul M. Harrison (PLoS Comput. Biol., 2012)

Public data and open source tools for multi-assay genomic investigation of disease. - Lavanya Kannan; Marcel Ramos; Angela Re; Nehme Hachem; Zhaleh Safikhani; Deena M. A. Gendoo; Sean Davis 001; David Gomez-Cabrero; Robert Castelo; Kasper D. Hansen; Vincent J. Carey; Martin Morgan; et al. (Briefings Bioinform., 2016)

Genefu: an R/Bioconductor package for computation of gene expression-based signatures in breast cancer. - Deena M. A. Gendoo; Natchar Ratanasirigulchai; Markus S. Schröder; Laia Paré; Joel S. Parker; Aleix Prat; Benjamin Haibe-Kains (Bioinform., 2016)

PharmacoGx: an R package for analysis of large pharmacogenomic datasets. - Petr Smirnov; Zhaleh Safikhani; Nehme Hachem; Dong Wang; Adrian She; Catharina Olsen; Mark Freeman 002; Heather Marie Selby; Deena M. A. Gendoo; Patrick Grossmann; Andrew H. Beck; Hugo J. W. L. Aerts; et al. (Bioinform., 2016)

MM2S: personalized diagnosis of medulloblastoma patients and model systems. - Deena M. A. Gendoo; Benjamin Haibe-Kains (Source Code Biol. Medicine, 2016)

Whole genomes define concordance of matched primary, xenograft, and organoid models of pancreas cancer. - Deena M. A. Gendoo; Robert E. Denroche; Amy Zhang; Nikolina Radulovich; Gun Ho Jang; Mathieu Lemire; Sandra Fischer; Dianne Chadwick; Ilinca M. Lungu; Emin Ibrahimov; Ping-Jiang Cao; Lincoln D. Stein; et al. (PLoS Comput. Biol., 2019)