BlOMIND-protein property prediction by property proximity profiles. - Deendayal Dinakarpandian; Vijay Kumar 002 (SAC, 2002)

ConsDiff: Identification of Conserved Differences between Sets of Amino Acid Sequences. - Saumil Mehta; Deendayal Dinakarpandian (DEXA Workshops, 2003)

Tandem machine learning for the identification of genes regulated by transcription factors. - Deendayal Dinakarpandian; Venetia Raheja; Saumil Mehta; Erin G. Schuetz; Peter K. Rogan (BMC Bioinform., 2005)

ConsDiff: an algorithm for the detection of conserved differences between protein sequences. - Saumil Mehta; Deendayal Dinakarpandian (Data Knowl. Eng., 2005)

Ontological Modeling of Transformation in Heart Defect Diagrams. - Viswanath Venkatesh; Tuanjie Tong; Deendayal Dinakarpandian; Yugyung Lee (AMIA, 2006)

Model Formulation: MachineProse: An Ontological Framework for Scientific Assertions. - Deendayal Dinakarpandian; Yugyung Lee; Kartik Vishwanath; Rohini Lingambhotla (J. Am. Medical Informatics Assoc., 2006)

A New Metric to Measure Gene Product Similarity. - Sachin Mathur; Deendayal Dinakarpandian (BIBM, 2007)

A Panoramic Approach to Integrated Evaluation of Ontologies in the Semantic Web. - Sourish Dasgupta; Deendayal Dinakarpandian; Yugyung Lee (EON, 2007)

Modeling biomedical assertions in the semantic web. - Deendayal Dinakarpandian; Tuanjie Tong; Yugyung Lee (SAC, 2007)

A pragmatic approach to mapping the open biomedical ontologies. - Deendayal Dinakarpandian; Tuanjie Tong; Yugyung Lee (Int. J. Bioinform. Res. Appl., 2007)

Literature Clustering using Citation Semantics. - Tuanjie Tong; Deendayal Dinakarpandian; Yugyung Lee (HICSS, 2009)

VirtualMindTrial: Virtual Clinical Trials for Mental Healthcare. - Yugyung Lee; Nikhilesh Katakam; Deendayal Dinakarpandian; Dennis Owens (HICSS, 2011)

MindFlow: Intelligent Workflow for Clinical Trials in Mental Healthcare. - Yugyung Lee; Saurav Jana; Teja Mylavarapu; Deendayal Dinakarpandian; Dennis Owens (HICSS, 2012)

Finding disease similarity based on implicit semantic similarity. - Sachin Mathur; Deendayal Dinakarpandian (J. Biomed. Informatics, 2012)

A semantic framework for intelligent matchmaking for clinical trial eligibility criteria. - Yugyung Lee; Saranya Krishnamoorthy; Deendayal Dinakarpandian (ACM Trans. Intell. Syst. Technol., 2013)

Automated Prediction of Hepatic Arterial Stenosis. - Justin J. Baraboo; Deendayal Dinakarpandian; Sherwin Chan (CRI, 2017)

TOCSOC: A Temporal Ontology for Comparing the Survival Outcomes of Clinical Trials in Oncology. - Deendayal Dinakarpandian; Michaela Liedtke; Mark A. Musen; Bhavish Dinakar (ICBO, 2018)

Semantic Changepoint Detection for Finding Potentially Novel Research Publications. - Bhavish Dinakar; Mayla Boguslav; Carsten Görg; Deendayal Dinakarpandian (PSB, 2021)