GrammR: graphical representation and modeling of count data with application in metagenomics. - Deepak Nag Ayyala; Shili Lin (Bioinform., 2015)

Statistical methods for detecting differentially methylated regions based on MethylCap-seq data. - Deepak Nag Ayyala; David E. Frankhouser; Javkhlan-Ochir Ganbat; Guido Marcucci; Ralf Bundschuh; Pearlly Yan; Shili Lin (Briefings Bioinform., 2016)

Mean vector testing for high-dimensional dependent observations. - Deepak Nag Ayyala; Junyong Park 001; Anindya Roy (J. Multivar. Anal., 2017)

Two-sample high dimensional mean test based on prepivots. - Santu Ghosh; Deepak Nag Ayyala; Rafael Hellebuyck (Comput. Stat. Data Anal., 2021)

Differential RNA methylation using multivariate statistical methods. - Deepak Nag Ayyala; Jianan Lin; Zhengqing Ouyang (Briefings Bioinform., 2022)

Covariance matrix testing in high dimension using random projections. - Deepak Nag Ayyala; Santu Ghosh; Daniel F. Linder (Comput. Stat., 2022)