Massively parallel knowledge representation and reasoning: Taking a cue from the brain. - Lokendra Shastri; Deepak R. Mani (Parallel Processing for Artificial Intelligence 3, 1997)

CHAMP: A Prototype for Automated Cellular Churn Prediction. - Brij M. Masand; Piew Datta; Deepak R. Mani; Bin Li (Data Min. Knowl. Discov., 1999)

Automated Cellular Modeling and Prediction on a Large Scale. - Piew Datta; Brij M. Masand; Deepak R. Mani; Bin Li (Artif. Intell. Rev., 2000)

Clustering with position-specific constraints on variance: Applying redescending M-estimators to label-free LC-MS data analysis. - Rudolf Frühwirth; Deepak R. Mani; Saumyadipta Pyne (BMC Bioinform., 2011)

Statistical characterization of multiple-reaction monitoring mass spectrometry (MRM-MS) assays for quantitative proteomics. - Deepak R. Mani; Susan E. Abbatiello; Steven A. Carr (BMC Bioinform., 2012)

Parallel deterministic annealing clustering and its application to LC-MS data analysis. - Geoffrey C. Fox; Deepak R. Mani; Saumyadipta Pyne (IEEE BigData, 2013)

A framework for installable external tools in Skyline. - Daniel Broudy; Trevor Killeen; Meena Choi; Nicholas Shulman; Deepak R. Mani; Susan E. Abbatiello; Deepak Mani; Rushdy Ahmad; Alexandria K. Sahu; Birgit Schilling; Kaipo Tamura; Yuval Boss; et al. (Bioinform., 2014)