Toward Unsupervised Classification of Calcified Arterial Lesions. - Gerd Brunner; Uday Kurkure; Deepak Roy Chittajallu; Raja P. Yalamanchili; Ioannis A. Kakadiaris (MICCAI (1), 2008)

Fuzzy-Cuts: A knowledge-driven graph-based method for medical image segmentation. - Deepak Roy Chittajallu; Gerd Brunner; Uday Kurkure; Raja P. Yalamanchili; Ioannis A. Kakadiaris (CVPR, 2009)

Patch-Cuts: A Graph-Based Image Segmentation Method Using Patch Features and Spatial Relations. - Gerd Brunner; Deepak Roy Chittajallu; Uday Kurkure; Ioannis A. Kakadiaris (BMVC, 2010)

A shape-driven MRF model for the segmentation of organs in medical images. - Deepak Roy Chittajallu; Shishir K. Shah; Ioannis A. Kakadiaris (CVPR, 2010)

Automatic segmentation of the diaphragm in non-contrast CT images. - Raja P. Yalamanchili; Deepak Roy Chittajallu; Paul Balanca; Balaji Tamarappoo; Daniel S. Berman; Damini Dey; Ioannis A. Kakadiaris (ISBI, 2010)

An Explicit Shape-Constrained MRF-Based Contour Evolution Method for 2-D Medical Image Segmentation. - Deepak Roy Chittajallu; Nikos Paragios; Ioannis A. Kakadiaris (IEEE J. Biomed. Health Informatics, 2014)

Automatic Estimation of the Optic Nerve Sheath Diameter from Ultrasound Images. - Samuel Gerber; Maeliss Jallais; Thomas Hastings Greer; Matt McCormick 001; Sean Montgomery; Bradley Freeman; Deborah Shipley Kane; Deepak Roy Chittajallu; Neal Siekierski; Stephen R. Aylward (BIVPCS/POCUS@MICCAI, 2017)

Ultrasound Augmentation: Rapid 3-D Scanning for Tracking and On-Body Display. - Maeliss Jallais; Thomas Hastings Greer; Samuel Gerber; Matt McCormick 001; Deepak Roy Chittajallu; Neal Siekierski; Stephen R. Aylward (BIVPCS/POCUS@MICCAI, 2017)

Vectorized persistent homology representations for characterizing glandular architecture in histology images. - Deepak Roy Chittajallu; Neal Siekierski; Sanghoon Lee 007; Samuel Gerber; Jonathan D. Beezley; David Manthey; David A. Gutman; Lee Cooper 001 (ISBI, 2018)

Scoliosis screening and monitoring using self contained ultrasound and neural networks. - Thomas Hastings Greer; Samuel Gerber; Marc Niethammer; Roland Kwitt; Matt McCormick 001; Deepak Roy Chittajallu; Neal Siekierski; Matthew Oetgen; Kevin Cleary; Stephen R. Aylward (ISBI, 2018)

Automatic quantification framework to detect cracks in teeth. - Hina Shah; Pablo Hernandez; François Budin; Deepak Roy Chittajallu; Jean-Baptiste Vimort; Rick Walter; André Mol; Asma Khan; Beatriz Paniagua (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2018)

XAI-CBIR: Explainable AI System for Content based Retrieval of Video Frames from Minimally Invasive Surgery Videos. - Deepak Roy Chittajallu; Bo Dong; Paul Tunison; Roddy Collins; Katerina O. Wells; James W. Fleshman; Ganesh Sankaranarayanan; Steven D. Schwaitzberg; Lora Cavuoto; Andinet Enquobahrie (ISBI, 2019)

Content-based retrieval of video segments from minimally invasive surgery videos using deep convolutional video descriptors and iterative query refinement. - Deepak Roy Chittajallu; Arslan Basharat; Paul Tunison; Samantha Horvath; Katerina O. Wells; Steven G. Leeds; James W. Fleshman; Ganesh Sankaranarayanan; Andinet Enquobahrie (Image-Guided Procedures, 2019)

Structured crowdsourcing enables convolutional segmentation of histology images. - Mohamed Amgad; Habiba Elfandy; Hagar Hussein; Lamees A. Atteya; Mai A. T. Elsebaie; Lamia S. Abo Elnasr; Rokia Adel Sakr; Hazem S. E. Salem; Ahmed F. Ismail; Anas M. Saad; Joumana Ahmed; Maha A. T. Elsebaie; et al. (Bioinform., 2019)

Image-Based Methods for Phase Estimation, Gating, and Temporal Superresolution of Cardiac Ultrasound. - Deepak Roy Chittajallu; Matthew McCormick 001; Samuel Gerber; Tomasz J. Czernuszewicz; Ryan C. Gessner; Monte S. Willis; Marc Niethammer; Roland Kwitt; Stephen R. Aylward (IEEE Trans. Biomed. Eng., 2019)

HistomicsML2.0: Fast interactive machine learning for whole slide imaging data. - Sanghoon Lee 007; Mohamed Amgad; Deepak Roy Chittajallu; Matt McCormick 001; Brian P. Pollack; Habiba Elfandy; Hagar Hussein; David A. Gutman; Lee A. D. Cooper (CoRR, 2020)

A feature-based affine registration method for capturing background lung tissue deformation for ground glass nodule tracking. - Yehuda K. Ben-Zikri; María Helguera; David Fetzer; David A. Shrier; Stephen R. Aylward; Deepak Chittajallu; Marc Niethammer; Nathan D. Cahill; Cristian A. Linte (Comput. methods Biomech. Biomed. Eng. Imaging Vis., 2022)

Stable and semi-stable sampling approaches for continuously used samples. - Nikita Astrakhantsev 001; Deepak Roy Chittajallu; Nabeel Kaushal; Vladislav Mokeev (Knowl. Inf. Syst., 2023)