SGDI: System for Genomic Data Integration. - Vincent J. Carey; Jeff Gentry; Deepayan Sarkar; Robert Gentleman; Srini Ramaswamy (Pacific Symposium on Biocomputing, 2008)

Using flowViz to visualize flow cytometry data. - Deepayan Sarkar; Nolwenn Le Meur; Robert Gentleman (Bioinform., 2008)

Extending lattice: using generics and methods to implement new visualization methods within the Trellis framework. - Deepayan Sarkar (Comput. Stat., 2008)

iFlow: A Graphical User Interface for Flow Cytometry Tools in Bioconductor. - Kyongryun Lee; Florian Hahne; Deepayan Sarkar; Robert Gentleman (Adv. Bioinformatics, 2009)

flowCore: a Bioconductor package for high throughput flow cytometry. - Florian Hahne; Nolwenn LeMeur; Ryan Remy Brinkman; Byron Ellis; Perry Haaland; Deepayan Sarkar; Josef Spidlen; Errol Strain; Robert Gentleman (BMC Bioinform., 2009)

Statistical Significance of Optical Map Alignments. - Deepayan Sarkar; Steve Goldstein; David C. Schwartz; Michael A. Newton (J. Comput. Biol., 2012)

A new family of orthogonal Latin hypercube designs. - Aloke Dey; Deepayan Sarkar (Australas. J Comb., 2017)

nhanesA: achieving transparency and reproducibility in NHANES research. - Laha Ale; Robert Gentleman; Teresa Filshtein Sonmez; Deepayan Sarkar; Christopher Endres (Database J. Biol. Databases Curation, 2024)