Multiscale Modeling of Alternative Splicing Regulation. - Damien Eveillard; Delphine Ropers; Hidde de Jong; Christiane Branlant; Alexander Bockmayr (CMSB, 2003)

A multi-scale constraint programming model of alternative splicing regulation. - Damien Eveillard; Delphine Ropers; Hidde de Jong; Christiane Branlant; Alexander Bockmayr (Theor. Comput. Sci., 2004)

Qualitative Analysis and Verification of Hybrid Models of Genetic Regulatory Networks: Nutritional Stress Response in. - Grégory Batt; Delphine Ropers; Hidde de Jong; Johannes Geiselmann; Michel Page; Dominique Schneider (HSCC, 2005)

Analysis and Verification of Qualitative Models of Genetic Regulatory Networks: A Model-Checking Approach. - Grégory Batt; Delphine Ropers; Hidde de Jong; Johannes Geiselmann; Radu Mateescu 001; Michel Page; Dominique Schneider (IJCAI, 2005)

Validation of qualitative models of genetic regulatory networks by model checking: analysis of the nutritional stress response in Escherichia coli. - Grégory Batt; Delphine Ropers; Hidde de Jong; Johannes Geiselmann; Radu Mateescu 001; Michel Page; Dominique Schneider (ISMB (Supplement of Bioinformatics), 2005)

Strategies for dealing with incomplete information in the modeling of molecular interaction networks. - Hidde de Jong; Delphine Ropers (Briefings Bioinform., 2006)

Analyse qualitative de la dynamique de réseaux de régulation génique par des modèles linéaires par morceaux. - Grégory Batt; Hidde de Jong; Johannes Geiselmann; Jean-Luc Gouzé; Michel Page; Delphine Ropers; Sari Tewfik; Dominique Schneider (Tech. Sci. Informatiques, 2007)

Temporal Logic Patterns for Querying Qualitative Models of Genetic Regulatory Networks. - Pedro T. Monteiro 001; Delphine Ropers; Radu Mateescu 001; Ana T. Freitas; Hidde de Jong (ECAI, 2008)

Temporal logic patterns for querying dynamic models of cellular interaction networks. - Pedro T. Monteiro 001; Delphine Ropers; Radu Mateescu 001; Ana T. Freitas; Hidde de Jong (ECCB, 2008)

A declarative constraint-based method for analyzing discrete genetic regulatory networks. - Fabien Corblin; Sébastien Tripodi; Eric Fanchon; Delphine Ropers; Laurent Trilling (Biosyst., 2009)

Modeling and formal verification of biological regulatory networks: An integrative approach. - Pedro T. Monteiro 001; Ana T. Freitas; Delphine Ropers; Radu Mateescu 001; Hidde de Jong (BIBM Workshops, 2010)

WellReader: a MATLAB program for the analysis of fluorescence and luminescence reporter gene data. - Frédéric Boyer; Bruno Besson; Guillaume Baptist; Jérôme Izard; Corinne Pinel; Delphine Ropers; Johannes Geiselmann; Hidde de Jong (Bioinform., 2010)

Experimental and computational validation of models of fluorescent and luminescent reporter genes in bacteria. - Hidde de Jong; Caroline Ranquet; Delphine Ropers; Corinne Pinel; Johannes Geiselmann (BMC Syst. Biol., 2010)

The Carbon Assimilation Network in Escherichia coli Is Densely Connected and Largely Sign-Determined by Directions of Metabolic Fluxes. - Valentina Baldazzi; Delphine Ropers; Yves Markowicz; Daniel Kahn; Johannes Geiselmann; Hidde de Jong (PLoS Comput. Biol., 2010)

Model Reduction Using Piecewise-Linear Approximations Preserves Dynamic Properties of the Carbon Starvation Response in Escherichia coli. - Delphine Ropers; Valentina Baldazzi; Hidde de Jong (IEEE ACM Trans. Comput. Biol. Bioinform., 2011)

Stability analysis of a reduced transcription-translation model of RNA polymerase. - Ismail Belgacem; Edith Grac; Delphine Ropers; Jean-Luc Gouzé (CDC, 2014)

Model reduction and process analysis of biological models. - Stefano Casagranda; Delphine Ropers; Jean-Luc Gouzé (MED, 2015)

Robust reconstruction of gene expression profiles from reporter gene data using linear inversion. - Valentin Zulkower; Michel Page; Delphine Ropers; Johannes Geiselmann; Hidde de Jong (Bioinform., 2015)

Estimation of time-varying growth, uptake and excretion rates from dynamic metabolomics data. - Eugenio Cinquemani; Valérie Laroute; Muriel Cocaign-Bousquet; Hidde de Jong; Delphine Ropers (Bioinform., 2017)

Principal process analysis of biological models. - Stefano Casagranda; Suzanne Touzeau; Delphine Ropers; Jean-Luc Gouzé (BMC Syst. Biol., 2018)

An ensemble of mathematical models showing diauxic growth behaviour. - Andreas Kremling; Johannes Geiselmann; Delphine Ropers; Hidde de Jong (BMC Syst. Biol., 2018)

Modelling biochemical reaction networks in bacteria - From data to models and back. (Modélisation de réseaux biochimiques bactériens - Un aller-retour entre données et modèles). - Delphine Ropers (2021)