HackaMol: An Object-Oriented Modern Perl Library for Molecular Hacking on Multiple Scales. - Demian Riccardi; Jerry M. Parks; Alexander Johs; Jeremy C. Smith (J. Chem. Inf. Model., 2015)

Cys.sqlite: A Structured-Information Approach to the Comprehensive Analysis of Cysteine Disulfide Bonds in the Protein Databank. - Theodore L. Fobe; Andrei F. Kazakov; Demian Riccardi (J. Chem. Inf. Model., 2019)

Towards improved FAIRness of the ThermoML Archive. - Demian Riccardi; Zachary Trautt; Ala Bazyleva; Eugene Paulechka; Vladimir Diky; Joseph W. Magee; Andrei F. Kazakov; Scott A. Townsend; Chris D. Muzny (J. Comput. Chem., 2022)