Semi-local variational optical flow estimation. - Denis Fortun; Charles Kervrann (ICIP, 2012)

Correlation and variational approaches for motion and diffusion estimation in fluorescence imaging. - Denis Fortun; Chen Chen; Perrine Paul-Gilloteaux; François Waharte; Jean Salamero; Charles Kervrann (EUSIPCO, 2013)

Aggregation of patch-based estimations for illumination-invariant optical flow in live cell imaging. - Denis Fortun; Patrick Bouthemy; Perrine Paul-Gilloteaux; Charles Kervrann (ISBI, 2013)

Aggregation Framework and Patch-Based Image Representation for Optical Flow. (Méthode d'Agrégation et Représentation d'Images par Motifs pour le Flot Optique). - Denis Fortun (2014)

Sparse Aggregation Framework for Optical Flow Estimation. - Denis Fortun; Patrick Bouthemy; Charles Kervrann (SSVM, 2015)

Optical flow modeling and computation: A survey. - Denis Fortun; Patrick Bouthemy; Charles Kervrann (Comput. Vis. Image Underst., 2015)

Isotropic resolution in fluorescence imaging by single particle reconstruction. - Denis Fortun; Paul Guichard; Ning Chu; Michael Unser (ISBI, 2016)

Aggregation of local parametric candidates with exemplar-based occlusion handling for optical flow. - Denis Fortun; Patrick Bouthemy; Charles Kervrann (Comput. Vis. Image Underst., 2016)

A Variational Aggregation Framework for Patch-Based Optical Flow Estimation. - Denis Fortun; Patrick Bouthemy; Charles Kervrann (J. Math. Imaging Vis., 2016)

Reconstruction From Multiple Poses in Fluorescence Imaging: Proof of Concept. - Denis Fortun; Paul Guichard; Ning Chu; Michael Unser (IEEE J. Sel. Top. Signal Process., 2016)

Spatially-Variant Kernel for Optical Flow Under Low Signal-to-Noise Ratios Application to Microscopy. - Denis Fortun; Noémie Debroux; Charles Kervrann (ICCV Workshops, 2017)

Fast Piecewise-Affine Motion Estimation Without Segmentation. - Denis Fortun; Martin Storath; Dennis Rickert; Andreas Weinmann; Michael Unser (IEEE Trans. Image Process., 2018)

Reconstruction From Multiple Particles for 3D Isotropic Resolution in Fluorescence Microscopy. - Denis Fortun; Paul Guichard; Virginie Hamel; Carlos Oscar Sánchez Sorzano; Niccolo Banterle; Pierre Gonczy; Michael Unser (IEEE Trans. Medical Imaging, 2018)

Joint Registration and Change Detection in Longitudinal Brain MRI. - Eléonore Dufresne; Denis Fortun; Babloo Kumar; Stéphane Kremer; Vincent Noblet (ISBI, 2020)

Stacked Pointnets For Alignment Of Particles With Cylindrical Symmetry In Single Molecule Localization Microscopy. - Youbo Fan; Sylvain Faisan; Étienne Baudrier; Fabian Zwettler; Markus Sauer; Denis Fortun (ISBI, 2021)

Multiview point cloud registration with anisotropic and space-varying localization noise. - Denis Fortun; Étienne Baudrier; Fabian Zwettler; Markus Sauer; Sylvain Faisan (CoRR, 2022)

Fast and Robust Single Particle Reconstruction in 3D Fluorescence Microscopy. - Thibaut Eloy; Étienne Baudrier; Marine Laporte; Virginie Hamel; Paul Guichard; Denis Fortun (IEEE Trans. Computational Imaging, 2023)

Particle Detection Based on Few Shot Learning in 3D Fluorescence Microscopy. - Luc Vedrenne; Étienne Baudrier; Denis Fortun (ISBI, 2024)

Multiview Point Cloud Registration with Anisotropic and Spatially Varying Localization Noise. - Denis Fortun; Étienne Baudrier; Fabian Zwettler; Markus Sauer; Sylvain Faisan (SIAM J. Imaging Sci., 2025)

Multiview Point Cloud Registration via Optimization in an Autoencoder Latent Space. - Luc Vedrenne; Sylvain Faisan; Denis Fortun (IEEE Trans. Image Process., 2025)