An algorithm for the multiple common subgraph problem. - Denis M. Bayada; Richard W. Simpson; A. Peter Johnson; Claude Laurenço (J. Chem. Inf. Comput. Sci., 1992)

Comparison of two implementations of the incremental construction algorithm in flexible docking of thrombin inhibitors. - Ronald M. A. Knegtel; Denis M. Bayada; Richard A. Engh; Wolfgang von der Saal; Vincent J. van Geerestein; Peter D. J. Grootenhuis (J. Comput. Aided Mol. Des., 1999)

Molecular Diversity and Representativity in Chemical Databases. - Denis M. Bayada; Hans Hamersma; Vincent J. van Geerestein (J. Chem. Inf. Comput. Sci., 1999)

A novel method of aligning molecules by local surface shape similarity. - David A. Cosgrove; Denis M. Bayada; A. Peter Johnson (J. Comput. Aided Mol. Des., 2000)