Entropy Measures Quantify Global Splicing Disorders in Cancer. - William Ritchie; Samuel Granjeaud; Denis Puthier; Daniel Gautheret (PLoS Comput. Biol., 2008)

TranscriptomeBrowser 3.0: introducing a new compendium of molecular interactions and a new visualization tool for the study of gene regulatory networks. - Cyrille Lepoivre; Aurélie Bergon; Fabrice Lopez; Narayanan Perumal; Catherine Nguyen; Jean Imbert; Denis Puthier (BMC Bioinform., 2012)

Explore, edit and leverage genomic annotations using Python GTF toolkit. - Frédéric Lopez; Guillaume Charbonnier; Yasmina Kermezli; Mohamed Belhocine; Quentin Ferré; N. Zweig; Mourad Aribi; Aitor González; Salvatore Spicuglia; Denis Puthier (Bioinform., 2019)

OLOGRAM: determining significance of total overlap length between genomic regions sets. - Quentin Ferré; Guillaume Charbonnier; N. Sadouni; Frédéric Lopez; Yasmina Kermezli; Salvatore Spicuglia; Cécile Capponi; Badih Ghattas; Denis Puthier (Bioinform., 2020)

Anomaly detection in genomic catalogues using unsupervised multi-view autoencoders. - Quentin Ferré; Jeanne Chèneby; Denis Puthier; Cécile Capponi; Benoît Ballester (BMC Bioinform., 2021)