MuTrack: a genome analysis system for large-scale mutagenesis in the mouse. - Erich J. Baker; Leslie Galloway; Barbara Jackson; Denise Schmoyer; Jay Snoddy (BMC Bioinform., 2004)

GOTree Machine (GOTM): a web-based platform for interpreting sets of interesting genes using Gene Ontology hierarchies. - Bing Zhang 003; Denise Schmoyer; Stefan Kirov; Jay Snoddy (BMC Bioinform., 2004)

GeneKeyDB: A lightweight, gene-centric, relational database to support data mining environments. - S. A. Kirov; Xinxia Peng; E. Baker; Denise Schmoyer; Bing Zhang 003; Jay Snoddy (BMC Bioinform., 2005)

SEBINI-CABIN: An Analysis Pipeline for Biological Network Inference, with a Case Study in Protein-Protein Interaction Network Reconstruction. - Ronald C. Taylor; Mudita Singhal; Don Simone Daly; Kelly Domico; Amanda M. White; Deanna L. Auberry; Kenneth J. Auberry; Brian Hooker; Gregory B. Hurst; Jason E. McDermott; W. Hayes McDonald; Dale Pelletier; et al. (ICMLA, 2007)

Statistically appraising process quality of affinity isolation experiments. - Julia L. Sharp; John J. Borkowski; Denise Schmoyer; Don Simone Daly; Samuel O. Purvine; William R. Cannon; Gregory B. Hurst (Comput. Stat. Data Anal., 2009)

An analysis pipeline for the inference of protein-protein interaction networks. - Ronald C. Taylor; Mudita Singhal; Don Simone Daly; Jason M. Gilmore; William R. Cannon; Kelly Domico; Amanda M. White; Deanna L. Auberry; Kenneth J. Auberry; Brian Hooker; Gregory B. Hurst; Jason E. McDermott; et al. (Int. J. Data Min. Bioinform., 2009)

Shewanella knowledgebase: integration of the experimental data and computational predictions suggests a biological role for transcription of intergenic regions. - Tatiana V. Karpinets; Margaret F. Romine; Denise Schmoyer; Guruprasad Kora; Mustafa H. Syed; Michael R. Leuze; Margrethe H. Serres; Byung-Hoon Park; Nagiza F. Samatova; Edward C. Uberbacher (Database J. Biol. Databases Curation, 2010)