Inferring the experimental design for accurate gene regulatory network inference. - Deniz Seçilmis; Thomas Hillerton; Sven Nelander; Erik L. L. Sonnhammer (Bioinform., 2021)

Improving the accuracy of gene regulatory network inference from noisy data. - Deniz Seçilmis (2021)

Fast and accurate gene regulatory network inference by normalized least squares regression. - Thomas Hillerton; Deniz Seçilmis; Sven Nelander; Erik L. L. Sonnhammer (Bioinform., 2022)

GRNbenchmark - a web server for benchmarking directed gene regulatory network inference methods. - Deniz Seçilmis; Thomas Hillerton; Erik L. L. Sonnhammer (Nucleic Acids Res., 2022)