Affinity Density: a novel genomic approach to the identification of transcription factor regulatory targets. - Dennis J. Hazelett; Daniel L. Lakeland; Joseph B. Weiss (Bioinform., 2009)

motifbreakR: an R/Bioconductor package for predicting variant effects at transcription factor binding sites. - Simon G. Coetzee; Gerhard A. Coetzee; Dennis J. Hazelett (Bioinform., 2015)

ELMER v.2: an R/Bioconductor package to reconstruct gene regulatory networks from DNA methylation and transcriptome profiles. - Tiago Chedraoui Silva; Simon G. Coetzee; Nicole Gull; Lijing Yao; Dennis J. Hazelett; Houtan Noushmehr; De-Chen Lin; Benjamin P. Berman (Bioinform., 2019)

Genome-wide association studies are enriched for interacting genes. - Peter T. Nguyen; Simon G. Coetzee; Irina Silacheva; Dennis J. Hazelett (BioData Min., 2025)