DrugScorePPI for scoring protein-protein interactions: improving a knowledge-based scoring function by atomtype-based QSAR. - Dennis M. Krüger; Holger Gohlke (J. Cheminformatics, 2010)

DrugScorePPI webserver: fast and accurate in silico alanine scanning for scoring protein-protein interactions. - Dennis M. Krüger; Holger Gohlke (Nucleic Acids Res., 2010)

Towards targeting protein-protein interfaces with small molecules. - Holger Gohlke; Alexander Metz; Christopher Pfleger; Dennis M. Krüger; Sina Kazemi (J. Cheminformatics, 2011)

Predicting protein-protein interactions with DrugScorePPI: fully-flexible docking, scoring, and in silico alanine-scanning. - Dennis M. Krüger; José Ignacio Garzón; P. C. Montes; Holger Gohlke (J. Cheminformatics, 2011)

How Good Are State-of-the-Art Docking Tools in Predicting Ligand Binding Modes in Protein-Protein Interfaces? - Dennis M. Krüger; Gisela Jessen; Holger Gohlke (J. Chem. Inf. Model., 2012)

NMSim Web Server: integrated approach for normal mode-based geometric simulations of biologically relevant conformational transitions in proteins. - Dennis M. Krüger; Aqeel Ahmed; Holger Gohlke (Nucleic Acids Res., 2012)

CNA web server: rigidity theory-based thermal unfolding simulations of proteins for linking structure, (thermo-)stability, and function. - Dennis M. Krüger; Prakash Chandra Rathi; Christopher Pfleger; Holger Gohlke (Nucleic Acids Res., 2013)

Computational Knowledge-Based Prediction of Protein-Protein Recognition. - Dennis M. Krüger (2014)