Detecting putative orthologs. - Dennis P. Wall; H. B. Fraser; A. E. Hirsh (Bioinform., 2003)

Roundup: a multi-genome repository of orthologs and evolutionary distances. - Todd F. DeLuca; I-Hsien Wu; Jian Pu; Thomas Monaghan; Leonid Peshkin; Saurav Singh; Dennis P. Wall (Bioinform., 2006)

Collaborative text-annotation resource for disease-centered relation extraction from biomedical text. - Carlos Cano; Thomas Monaghan; Armando Blanco; Dennis P. Wall; Leonid Peshkin (J. Biomed. Informatics, 2009)

Cloud computing for comparative genomics. - Dennis P. Wall; Parul Kudtarkar; Vincent A. Fusaro; Rimma Pivovarov; Prasad Patil; Peter J. Tonellato (BMC Bioinform., 2010)

Detecting biological network organization and functional gene orthologs. - Jike Cui; Todd F. DeLuca; Jae-Yoon Jung; Dennis P. Wall (Bioinform., 2011)

Phylogenetically informed logic relationships improve detection of biological network organization. - Jike Cui; Todd F. DeLuca; Jae-Yoon Jung; Dennis P. Wall (BMC Bioinform., 2011)

The semantic organization of the animal category: evidence from semantic verbal fluency and network theory. - Joaquín Goñi; Gonzalo Arrondo; Jorge Sepulcre; Iñigo Martincorena; Nieves Vélez de Mendizábal; Bernat Corominas-Murtra; Bartolomé Bejarano; Sergio Ardanza-Trevijano; Herminia Peraita; Dennis P. Wall; Pablo Villoslada (Cogn. Process., 2011)

Biomedical Cloud Computing With Amazon Web Services. - Vincent A. Fusaro; Prasad Patil; Erik Gafni; Dennis P. Wall; Peter J. Tonellato (PLoS Comput. Biol., 2011)

Roundup 2.0: enabling comparative genomics for over 1800 genomes. - Todd F. DeLuca; Jike Cui; Jae-Yoon Jung; Kristian Che St. Gabriel; Dennis P. Wall (Bioinform., 2012)

Personalized cloud-based bioinformatics services for research and education: use cases and the elasticHPC package. - Mohamed El-Kalioby; Mohamed Abouelhoda; Jan Krüger; Robert Giegerich; Alexander Sczyrba; Dennis P. Wall; Peter J. Tonellato (BMC Bioinform., 2012)

COSMOS: Python library for massively parallel workflows. - Erik Gafni; Lovelace J. Luquette; Alex Lancaster; Jared B. Hawkins; Jae-Yoon Jung; Yassine Souilmi; Dennis P. Wall; Peter J. Tonellato (Bioinform., 2014)

A literature search tool for intelligent extraction of disease-associated genes. - Jae-Yoon Jung; Todd F. DeLuca; Tristan H. Nelson; Dennis P. Wall (J. Am. Medical Informatics Assoc., 2014)

Translational Meta-analytical Methods to Localize the Regulatory Patterns of Neurological Disorders in the Human Brain. - Vanessa V. Sochat; Maude David; Dennis P. Wall (AMIA, 2015)

Session Introduction. - Molly A. Hall; Shefali S. Verma; Dennis P. Wall; Jason H. Moore; Brendan Keating; Daniel B. Campbell; Gregory Gibson; Folkert W. Asselbergs; Sarah A. Pendergrass (Pacific Symposium on Biocomputing, 2015)

COSMOS: cloud enabled NGS analysis. - Yassine Souilmi; Jae-Yoon Jung; Alex Lancaster; Erik Gafni; Saaid Amzazi; Hassan Ghazal; Dennis P. Wall; Peter J. Tonellato (BMC Bioinform., 2015)

Invited Talks at the AAAI Symposium on Well-Being Computing. - Rafael A. Calvo; Nick Haber; Catalin Voss; Michael Nova; Dennis Salins; Michael Snyder 001; Dennis P. Wall (AAAI Spring Symposia, 2016)

A Wearable Social Interaction Aid for Children with Autism. - Peter Washington 001; Catalin Voss; Nick Haber; Serena Tanaka; Jena Daniels; Carl Feinstein; Terry Winograd; Dennis P. Wall (CHI Extended Abstracts, 2016)

Superpower glass: delivering unobtrusive real-time social cues in wearable systems. - Catalin Voss; Peter Washington 001; Nick Haber; Aaron Kline; Jena Daniels; Azar Fazel; Titas De; Beth McCarthy; Carl Feinstein; Terry Winograd; Dennis P. Wall (UbiComp Adjunct, 2016)

A practical approach to real-time neutral feature subtraction for facial expression recognition. - Nick Haber; Catalin Voss; Azar Fazel; Terry Winograd; Dennis P. Wall (WACV, 2016)

The Quantified Brain: A Framework for Mobile Device-Based Assessment of Behavior and Neurological Function. - Rajiv B. Kumar; Christopher Longhurst; Dennis P. Wall; David E. Stark (Appl. Clin. Inform., 2016)

Automated integration of continuous glucose monitor data in the electronic health record using consumer technology. - Rajiv B. Kumar; Nira D. Goren; David E. Stark; Dennis P. Wall; Christopher Longhurst (J. Am. Medical Informatics Assoc., 2016)

Machine learning for early detection of autism (and other conditions) using a parental questionnaire and home video screening. - Halim Abbas; Ford Garberson; Eric Glover; Dennis P. Wall (IEEE BigData, 2017)

De Novo Mutations in Autism Implicate the Synaptic Elimination Network. - Guhan Ram Venkataraman; Chloe O'Connell; Fumiko Egawa; Dorna Kashef Haghighi; Dennis P. Wall (PSB, 2017)

MC-GenomeKey: a multicloud system for the detection and annotation of genomic variants. - Hatem Elshazly; Yassine Souilmi; Peter J. Tonellato; Dennis P. Wall; Mohamed Abouelhoda (BMC Bioinform., 2017)

SuperpowerGlass: A Wearable Aid for the At-Home Therapy of Children with Autism. - Peter Washington 001; Catalin Voss; Aaron Kline; Nick Haber; Jena Daniels; Azar Fazel; Titas De; Carl Feinstein; Terry Winograd; Dennis P. Wall (Proc. ACM Interact. Mob. Wearable Ubiquitous Technol., 2017)

Analysis of Sex and Recurrence Ratios in Simplex and Multiplex Autism Spectrum Disorder Implicates Sex-Specific Alleles as Inheritance Mechanism. - Brianna Sierra Chrisman; Maya Varma; Peter Washington 001; Kelley M. Paskov; Nate Tyler Stockham; Jae-Yoon Jung; Dennis P. Wall (BIBM, 2018)

A Gamified Mobile System for Crowdsourcing Video for Autism Research. - Haik Kalantarian; Peter Washington 001; Jessey N. Schwartz; Jena Daniels; Nick Haber; Dennis P. Wall (ICHI, 2018)

Coalitional game theory as a promising approach to identify candidate autism genes. - Anika Gupta; Min Woo Sun; Kelley M. Paskov; Nate Tyler Stockham; Jae-Yoon Jung; Dennis P. Wall (PSB, 2018)

Feasibility Testing of a Wearable Behavioral Aid for Social Learning in Children with Autism. - Jena Daniels; Nick Haber; Catalin Voss; Jessey N. Schwartz; Serena Tamura; Azar Fazel; Aaron Kline; Peter Washington 001; Jennifer Phillips; Terry Winograd; Carl Feinstein; Dennis P. Wall (Appl. Clin. Inform., 2018)

Machine learning approach for early detection of autism by combining questionnaire and home video screening. - Halim Abbas; Ford Garberson; Eric Glover; Dennis P. Wall (J. Am. Medical Informatics Assoc., 2018)

Exploratory study examining the at-home feasibility of a wearable tool for social-affective learning in children with autism. - Jena Daniels; Jessey N. Schwartz; Catalin Voss; Nick Haber; Azar Fazel; Aaron Kline; Peter Washington 001; Carl Feinstein; Terry Winograd; Dennis P. Wall (npj Digit. Medicine, 2018)

Outgroup Machine Learning Approach Identifies Single Nucleotide Variants in Noncoding DNA Associated with Autism Spectrum Disorder. - Maya Varma; Kelley Marie Paskov; Jae-Yoon Jung; Brianna Sierra Chrisman; Nate Tyler Stockham; Peter Yigitcan Washington; Dennis Paul Wall (PSB, 2019)

Labeling images with facial emotion and the potential for pediatric healthcare. - Haik Kalantarian; Khaled Jedoui; Peter Washington 001; Qandeel Tariq; Kaiti Dunlap; Jessey N. Schwartz; Dennis P. Wall (Artif. Intell. Medicine, 2019)

Guess What? - Haik Kalantarian; Peter Washington 001; Jessey N. Schwartz; Jena Daniels; Nick Haber; Dennis P. Wall (J. Heal. Informatics Res., 2019)

Superpower Glass. - Aaron Kline; Catalin Voss; Peter Washington 001; Nick Haber; Jessey N. Schwartz; Qandeel Tariq; Terry Winograd; Carl Feinstein; Dennis P. Wall (GetMobile Mob. Comput. Commun., 2019)

Feature Selection and Dimension Reduction of Social Autism Data. - Peter Washington 001; Kelley Marie Paskov; Haik Kalantarian; Nate Tyler Stockham; Catalin Voss; Aaron Kline; Ritik Patnaik; Brianna Sierra Chrisman; Maya Varma; Qandeel Tariq; Kaitlyn Dunlap; Jessey N. Schwartz; et al. (PSB, 2020)

Game theoretic centrality: a novel approach to prioritize disease candidate genes by combining biological networks with the Shapley value. - Min Woo Sun; Stefano Moretti 001; Kelley M. Paskov; Nate Tyler Stockham; Maya Varma; Brianna Sierra Chrisman; Peter Yigitcan Washington; Jae-Yoon Jung; Dennis P. Wall (BMC Bioinform., 2020)

Designing a Holistic At-Home Learning Aid for Autism. - Catalin Voss; Nick Haber; Peter Washington 001; Aaron Kline; Beth McCarthy; Jena Daniels; Azar Fazel; Titas De; Carl Feinstein; Terry Winograd; Dennis P. Wall (CoRR, 2020)

A Wearable Social Interaction Aid for Children with Autism. - Nick Haber; Catalin Voss; Jena Daniels; Peter Washington 001; Azar Fazel; Aaron Kline; Titas De; Terry Winograd; Carl Feinstein; Dennis P. Wall (CoRR, 2020)

Training an Emotion Detection Classifier using Frames from a Mobile Therapeutic Game for Children with Developmental Disorders. - Peter Washington 001; Haik Kalantarian; Jack Kent; Arman Husic; Aaron Kline; Émilie Leblanc; Cathy Hou; Cezmi Mutlu; Kaitlyn Dunlap; Yordan Penev; Maya Varma; Nate Tyler Stockham; et al. (CoRR, 2020)

A Mobile Game for Automatic Emotion-Labeling of Images. - Haik Kalantarian; Khaled Jedoui; Peter Washington 001; Dennis P. Wall (IEEE Trans. Games, 2020)

Activity Recognition with Moving Cameras and Few Training Examples: Applications for Detection of Autism-Related Headbanging. - Peter Washington 001; Aaron Kline; Onur Cezmi Mutlu; Émilie Leblanc; Cathy Hou; Nate Tyler Stockham; Kelley M. Paskov; Brianna Sierra Chrisman; Dennis P. Wall (CHI Extended Abstracts, 2021)

Raising the stakeholders: Improving patient outcomes through interprofessional collaborations in AI for healthcare. - Carly A. Bobak; Marek Svoboda; Kristine A. Giffin; Dennis P. Wall; Jason H. Moore (PSB, 2021)

Selection of trustworthy crowd workers for telemedical diagnosis of pediatric autism spectrum disorder. - Peter Washington 001; Émilie Leblanc; Kaitlyn Dunlap; Yordan Penev; Maya Varma; Jae-Yoon Jung; Brianna Sierra Chrisman; Min Woo Sun; Nate Tyler Stockham; Kelley Marie Paskov; Haik Kalantarian; Catalin Voss; et al. (PSB, 2021)

Achieving Trustworthy Biomedical Data Solutions. - Peter Washington 001; Serena Yeung; Bethany Percha; Nicholas P. Tatonetti; Jan T. Liphardt; Dennis P. Wall (PSB, 2021)

A Mobile Game Platform for Improving Social Communication in Children with Autism: A Feasibility Study. - Yordan Penev; Kaitlyn Dunlap; Arman Husic; Cathy Hou; Peter Washington 001; Émilie Leblanc; Aaron Kline; John Kent; Anthony Ng-Thow-Hing; Bennett Liu; Christopher Harjadi; Meagan Tsou; et al. (Appl. Clin. Inform., 2021)

Indels in SARS-CoV-2 occur at template-switching hotspots. - Brianna Sierra Chrisman; Kelley M. Paskov; Nate Tyler Stockham; Kevin Tabatabaei; Jae-Yoon Jung; Peter Washington 001; Maya Varma; Min Woo Sun; Sepideh Maleki; Dennis P. Wall (BioData Min., 2021)

Estimating sequencing error rates using families. - Kelley M. Paskov; Jae-Yoon Jung; Brianna Sierra Chrisman; Nate Tyler Stockham; Peter Washington 001; Maya Varma; Min Woo Sun; Dennis P. Wall (BioData Min., 2021)

A maximum flow-based network approach for identification of stable noncoding biomarkers associated with the multigenic neurological condition, autism. - Maya Varma; Kelley M. Paskov; Brianna Sierra Chrisman; Min Woo Sun; Jae-Yoon Jung; Nate Tyler Stockham; Peter Washington 001; Dennis P. Wall (BioData Min., 2021)

Improved detection of disease-associated gut microbes using 16S sequence-based biomarkers. - Brianna Sierra Chrisman; Kelley M. Paskov; Nate Tyler Stockham; Jae-Yoon Jung; Maya Varma; Peter Washington 001; Christine A. Tataru; Shoko Iwai; Todd Z. DeSantis; Maude M. David; Dennis P. Wall (BMC Bioinform., 2021)

Training Affective Computer Vision Models by Crowdsourcing Soft-Target Labels. - Peter Washington 001; Haik Kalantarian; Jack Kent; Arman Husic; Aaron Kline; Émilie Leblanc; Cathy Hou; Cezmi Mutlu; Kaitlyn Dunlap; Yordan Penev; Nate Tyler Stockham; Brianna Sierra Chrisman; et al. (Cogn. Comput., 2021)

Using Crowdsourcing to Train Facial Emotion Machine Learning Models with Ambiguous Labels. - Peter Washington 001; Onur Cezmi Mutlu; Émilie Leblanc; Aaron Kline; Cathy Hou; Brianna Sierra Chrisman; Nate Tyler Stockham; Kelley M. Paskov; Catalin Voss; Nick Haber; Dennis P. Wall (CoRR, 2021)

NetVec: A Scalable Hypergraph Embedding System. - Sepideh Maleki; Dennis P. Wall; Keshav Pingali (CoRR, 2021)

Activity Recognition for Autism Diagnosis. - Anish Lakkapragada; Peter Washington 001; Dennis P. Wall (CoRR, 2021)

Training and Profiling a Pediatric Emotion Recognition Classifier on Mobile Devices. - Agnik Banerjee; Peter Washington 001; Cezmi Mutlu; Aaron Kline; Dennis P. Wall (CoRR, 2021)

Measuring social curiosity-driven attentional differences in children with autism using an augmented reality-based phone app. - Samaher Radwan; Aaron Kline; Alejandro Galindo; Michael C. Frank; Dennis P. Wall; Nick Haber (CogSci, 2022)

TikTok for good: Creating a diverse emotion expression database. - Saimourya Surabhi; Bhavik Shah; Peter Washington 001; Onur Cezmi Mutlu; Émilie Leblanc; Prathamesh Mohite; Arman Husic; Aaron Kline; Kaitlyn Dunlap; Maya McNealis; Bennett Liu; Nick Deveaux; et al. (CVPR Workshops, 2022)

HyperNetVec: Fast and Scalable Hierarchical Embedding for Hypergraphs. - Sepideh Maleki; Donya Saless; Dennis P. Wall; Keshav Pingali (NetSci-X, 2022)

Classifying Autism from Crowdsourced Semi-Structured Speech Recordings: A Machine Learning Approach. - Nathan A. Chi; Peter Washington 001; Aaron Kline; Arman Husic; Cathy Hou; Chloe He 001; Kaitlyn Dunlap; Dennis P. Wall (CoRR, 2022)

Challenges and Opportunities for Machine Learning Classification of Behavior and Mental State from Images. - Peter Washington 001; Onur Cezmi Mutlu; Aaron Kline; Kelley M. Paskov; Nate Tyler Stockham; Brianna Sierra Chrisman; Nick Deveaux; Mourya Surhabi; Nick Haber; Dennis P. Wall (CoRR, 2022)

An Exploration of Active Learning for Affective Digital Phenotyping. - Peter Washington 001; Cezmi Mutlu; Aaron Kline; Cathy Hou; Kaitlyn Dunlap; Jack Kent; Arman Husic; Nate Tyler Stockham; Brianna Sierra Chrisman; Kelley M. Paskov; Jae-Yoon Jung; Dennis P. Wall (CoRR, 2022)

Mitigating Negative Transfer in Multi-Task Learning with Exponential Moving Average Loss Weighting Strategies. - Anish Lakkapragada; Essam Sleiman; Saimourya Surabhi; Dennis P. Wall (CoRR, 2022)

Evaluation of an artificial intelligence-based medical device for diagnosis of autism spectrum disorder. - Jonathan T. Megerian; Sangeeta Dey; Raun D. Melmed; Daniel L. Coury; Marc Lerner; Christopher J. Nicholls; Kristin Sohl; Rambod Rouhbakhsh; Anandhi Narasimhan; Jonathan Romain; Sailaja Golla; Safiullah Shareef; et al. (npj Digit. Medicine, 2022)

Mitigating Negative Transfer in Multi-Task Learning with Exponential Moving Average Loss Weighting Strategies (Student Abstract). - Anish Lakkapragada; Essam Sleiman; Saimourya Surabhi; Dennis P. Wall (AAAI, 2023)

TempT: Temporal consistency for Test-time adaptation. - Onur Cezmi Mutlu; Mohammadmahdi Honarmand; Saimourya Surabhi; Dennis P. Wall (CVPR Workshops, 2023)

A Review of and Roadmap for Data Science and Machine Learning for the Neuropsychiatric Phenotype of Autism. - Peter Washington 001; Dennis P. Wall (CoRR, 2023)

Computer Vision Estimation of Emotion Reaction Intensity in the Wild. - Yang Qian; Ali Kargarandehkordi; Onur Cezmi Mutlu; Saimourya Surabhi; Mohammadmahdi Honarmand; Dennis Paul Wall; Peter Washington 001 (CoRR, 2023)

Challenges in the Differential Classification of Individual Diagnoses from Co-Occurring Autism and ADHD Using Survey Data. - Aditi Jaiswal; Dennis P. Wall; Peter Washington 001 (BHI, 2024)

TikTokActions: A TikTok-Derived Video Dataset for Human Action Recognition. - Yang Qian; Yinan Sun; Ali Kargarandehkordi; Onur Cezmi Mutlu; Saimourya Surabhi; Pingyi Chen; Zain Jabbar; Dennis Paul Wall; Peter Washington 001 (CoRR, 2024)

Ensemble Modeling of Multiple Physical Indicators to Dynamically Phenotype Autism Spectrum Disorder. - Marie Huynh; Aaron Kline; Saimourya Surabhi; Kaitlyn Dunlap; Onur Cezmi Mutlu; Mohammadmahdi Honarmand; Parnian Azizian; Peter Washington 001; Dennis P. Wall (CoRR, 2024)

Selective Test-time Domain Adaptation Using Fisher Information for Robust Facial Expression Recognition In-the-wild. - Mohammadmahdi Honarmand; Onur Cezmi Mutlu; Parnian Azizian; Saimourya Surabhi; Dennis P. Wall (CVPR Workshops, 2025)

FIESTA: Fisher Information-based Efficient Selective Test-time Adaptation. - Mohammadmahdi Honarmand; Onur Cezmi Mutlu; Parnian Azizian; Saimourya Surabhi; Dennis P. Wall (CoRR, 2025)