rnaDesign: Local search for RNA secondary structure design. - Denny C. Dai; Herbert H. Tsang; Kay C. Wiese (CIBCB, 2009)

Performance prediction for RNA design using parametric and non-parametric regression models. - Denny C. Dai; Kay C. Wiese (CIBCB, 2009)

RNA-DV: an interactive tool for editing and visualizing RNA secondary structures. - Herbert H. Tsang; Denny C. Dai (BCB, 2012)