IdealKnock: A framework for efficiently identifying knockout strategies leading to targeted overproduction. - Deqing Gu; Cheng Zhang 002; Shengguo Zhou; Liujing Wei; Qiang Hua (Comput. Biol. Chem., 2016)

Reframed Genome-Scale Metabolic Model to Facilitate Genetic Design and Integration with Expression Data. - Deqing Gu; Xingxing Jian; Cheng Zhang 002; Qiang Hua (IEEE ACM Trans. Comput. Biol. Bioinform., 2017)