The Clark Phase-able Sample Size Problem: Long-Range Phasing and Loss of Heterozygosity in GWAS. - Bjarni V. Halldórsson; Derek Aguiar; Ryan Tarpine; Sorin Istrail (RECOMB, 2010)

Haplotype Phasing By Multi-Assembly of Shared Haplotypes: Phase-Dependent Interactions Between Rare Variants. - Bjarni V. Halldórsson; Derek Aguiar; Sorin Istrail (Pacific Symposium on Biocomputing, 2011)

The Clark Phaseable Sample Size Problem: Long-Range Phasing and Loss of Heterozygosity in GWAS. - Bjarni V. Halldórsson; Derek Aguiar; Ryan Tarpine; Sorin Istrail (J. Comput. Biol., 2011)

Workshop: Robust algorithms for inferring haplotype phase and deletion polymorphism from high-throughput whole genome sequence data. - Derek Aguiar; Sorin Istrail (ICCABS, 2012)

DELISHUS: an efficient and exact algorithm for genome-wide detection of deletion polymorphism in autism. - Derek Aguiar; Bjarni V. Halldórsson; Eric M. Morrow; Sorin Istrail (Bioinform., 2012)

HapCompass: A Fast Cycle Basis Algorithm for Accurate Haplotype Assembly of Sequence Data. - Derek Aguiar; Sorin Istrail (J. Comput. Biol., 2012)

Haplotype assembly in polyploid genomes and identical by descent shared tracts. - Derek Aguiar; Sorin Istrail (Bioinform., 2013)

Tumor Haplotype Assembly Algorithms for Cancer Genomics. - Derek Aguiar; Wendy S. W. Wong; Sorin Istrail (Pacific Symposium on Biocomputing, 2014)

Tractatus: An Exact and Subquadratic Algorithm for Inferring Identical-by-Descent Multi-shared Haplotype Tracts. - Derek Aguiar; Eric M. Morrow; Sorin Istrail (RECOMB, 2014)

"Genome-wide algorithms for haplotype assembly, haplotype phasing, and IBD inference". - Derek Aguiar (2014)

Combinatorial and statistical prediction of gene expression from haplotype sequence. - Berk A. Alpay; Pinar Demetci; Sorin Istrail; Derek Aguiar (Bioinform., 2020)

Case-level prediction of motion outcomes in civil litigation. - Devin J. McConnell; James Zhu; Sachin Pandya; Derek Aguiar (ICAIL, 2021)

Autoregressive Modeling of Utility Customer Outages with Deep Neural Networks. - Kingsley Udeh; David W. Wanik; Diego Cerrai; Derek Aguiar; Emmanouil N. Anagnostou (CCWC, 2022)

Bayesian Reconstruction and Differential Testing of Excised mRNA. - Marjan Hosseini; Devin J. McConnell; Derek Aguiar (CoRR, 2022)

Smooth and Stepwise Self-Distillation for Object Detection. - Jieren Deng; Xin Zhou 017; Hao Tian 005; Zhihong Pan 001; Derek Aguiar (ICIP, 2023)

Auto-Encoding Goodness of Fit. - Aaron Palmer; Zhiyi Chi; Derek Aguiar; Jinbo Bi (ICLR, 2023)

Deep statistical modelling of nanopore sequencing translocation times reveals latent non-B DNA structures. - Marjan Hosseini; Aaron Palmer; William Manka; Patrick G. S. Grady; Venkata Patchigolla; Jinbo Bi; Rachel J. O'Neill; Zhiyi Chi; Derek Aguiar (Bioinform., 2023)

Improving Opioid Use Disorder Risk Modelling through Behavioral and Genetic Feature Integration. - Sybille Légitime; Kaustubh Prabhu; Devin J. McConnell; Bing Wang; Dipak K. Dey; Derek Aguiar (CoRR, 2023)

Interpretable fake news detection with topic and deep variational models. - Marjan Hosseini; Alireza Javadian Sabet; Suining He; Derek Aguiar (Online Soc. Networks Media, 2023)

GBSD: Generative Bokeh with Stage Diffusion. - Jieren Deng; Xin Zhou 017; Hao Tian 005; Zhihong Pan 001; Derek Aguiar (ICASSP, 2024)

Probabilistic Storm and Electric Utility Customer Outage Prediction. - Kingsley Udeh; David W. Wanik; Diego Cerrai; Emmanouil N. Anagnostou; Derek Aguiar (IEEE Access, 2024)

Distilling Adversarial Robustness Using Heterogeneous Teachers. - Jieren Deng; Aaron Palmer; Rigel Mahmood; Ethan Rathbun; Jinbo Bi; Kaleel Mahmood; Derek Aguiar (CoRR, 2024)

Certifying Adapters: Enabling and Enhancing the Certification of Classifier Adversarial Robustness. - Jieren Deng; Hanbin Hong; Aaron Palmer; Xin Zhou 017; Jinbo Bi; Kaleel Mahmood; Yuan Hong 001; Derek Aguiar (CoRR, 2024)