A Closed-Form Method for Improving Inter-Subject Coherence in Diffusion Tensor Magnetic Resonance Imaging. - Nicholas Lange; Derek Jones; Carlo Pierpaoli (ISBI, 2004)

What do animat models model? - Derek Jones (J. Exp. Theor. Artif. Intell., 2012)

The use of the Sensecam to explore daily functioning of older adults with chronic pain. - Gemma Wilson; Derek Jones; Patricia Schofield; Denis Martin (SenseCam, 2013)

Building Information Modelling Design Ecologies: A New Model? - Derek Jones; Emma Dewberry (Int. J. 3 D Inf. Model., 2013)

Philosophy in the Age of Information: A Symposium on Luciano Floridi's The Philosophy of Information. - Anthony F. Beavers; Derek Jones (Minds Mach., 2014)

Editors' introduction. - Derek Jones; Anthony F. Beavers (J. Exp. Theor. Artif. Intell., 2015)

Changes in resting state MRI networks from a single season of football distinguishes controls, low, and high head impact exposure. - Gowtham Murugesan; Afarin Famili; Elizabeth M. Davenport; Benjamin C. Wagner; Jillian Urban; Mireille Kelley; Derek Jones; Christopher T. Whitlow; Joel D. Stitzel; Joseph A. Maldjian; Albert Montillo (ISBI, 2017)

Single season changes in resting state network power and the connectivity between regions distinguish head impact exposure level in high school and youth football players. - Gowtham Krishnan Murugesan; Behrouz Saghafi; Elizabeth M. Davenport; Benjamin C. Wagner; Jillian Urban-Hobson; Mireille Kelley; Derek Jones; Alex Powers; Christopher T. Whitlow; Joel D. Stitzel; Joseph A. Maldjian; Albert Montillo (Computer-Aided Diagnosis, 2018)

Quantifying the association between white matter integrity changes and subconcussive head impact exposure from a single season of youth and high school football using 3D convolutional neural networks. - Behrouz Saghafi; Gowtham Murugesan; Elizabeth M. Davenport; Benjamin C. Wagner; Jillian Urban; Mireille Kelley; Derek Jones; Alexander Powers; Christopher T. Whitlow; Joel D. Stitzel; Joseph A. Maldjian; Albert Montillo (Computer-Aided Diagnosis, 2018)

Minigo: A Case Study in Reproducing Reinforcement Learning Research. - Brian Lee; Andrew Jackson 004; Tom Madams; Seth Troisi; Derek Jones (RML@ICLR, 2019)

Improved Protein-ligand Binding Affinity Prediction with Structure-Based Deep Fusion Inference. - Derek Jones; Hyojin Kim 001; Xiaohua Zhang; Adam T. Zemla; Garrett Stevenson; William D. Bennett; Dan Kirshner 001; Sergio Ernesto Wong; Felice C. Lightstone; Jonathan E. Allen (CoRR, 2020)

Predicting Small Molecule Transfer Free Energies by Combining Molecular Dynamics Simulations and Deep Learning. - W. F. Drew Bennett; Stewart He; Camille L. Bilodeau; Derek Jones; Delin Sun; Hyojin Kim 001; Jonathan E. Allen; Felice C. Lightstone; Helgi I. Ingólfsson (J. Chem. Inf. Model., 2020)

Binding Affinity Prediction by Pairwise Function Based on Neural Network. - Fangqiang Zhu; Xiaohua Zhang; Jonathan E. Allen; Derek Jones; Felice C. Lightstone (J. Chem. Inf. Model., 2020)

High-throughput virtual screening of small molecule inhibitors for SARS-CoV-2 protein targets with deep fusion models. - Garrett A. Stevenson; Derek Jones; Hyojin Kim 001; W. F. Drew Bennett; Brian J. Bennion; Monica Borucki; Feliza Bourguet; Aidan Epstein; Magdalena Franco; Brooke Harmon; Stewart He; Max P. Katz; et al. (SC, 2021)

Enabling rapid COVID-19 small molecule drug design through scalable deep learning of generative models. - Sam Ade Jacobs; Tim Moon; Kevin McLoughlin; Derek Jones; David Hysom; Dong H. Ahn; John C. Gyllenhaal; Pythagoras Watson; Felice C. Lightstone; Jonathan E. Allen; Ian Karlin; Brian Van Essen (Int. J. High Perform. Comput. Appl., 2021)

Improved Protein-Ligand Binding Affinity Prediction with Structure-Based Deep Fusion Inference. - Derek Jones; Hyojin Kim 001; Xiaohua Zhang; Adam T. Zemla; Garrett Stevenson; W. F. Drew Bennett; Daniel A. Kirshner; Sergio Ernesto Wong; Felice C. Lightstone; Jonathan E. Allen (J. Chem. Inf. Model., 2021)

From Digital Divide to Digital Discovery: Re-thinking Online Learning and Interactions in Marginalized Communities. - Lay-Wah Carolina Ching-Chiang; Juan Manuel Fernández-Cárdenas; Nicole Lotz; Noé Abraham González-Nieto; Mark Gaved; Derek Jones; Alejandra Díaz de León; Rafael Machado (Innovation Practices for Digital Transformation in the Global South, 2022)

HD-Bind: Encoding of Molecular Structure with Low Precision, Hyperdimensional Binary Representations. - Derek Jones; Jonathan E. Allen; Xiaohua Zhang; Behnam Khaleghi; Jaeyoung Kang 001; Weihong Xu; Niema Moshiri; Tajana Simunic Rosing (CoRR, 2023)

Clustering Protein Binding Pockets and Identifying Potential Drug Interactions: A Novel Ligand-Based Featurization Method. - Garrett A. Stevenson; Dan Kirshner 001; Brian J. Bennion; Yue Yang; Xiaohua Zhang; Adam T. Zemla; Marisa W. Torres; Aidan Epstein; Derek Jones; Hyojin Kim 001; W. F. Drew Bennett; Sergio Ernesto Wong; et al. (J. Chem. Inf. Model., 2023)