Application of diffusion tensor MRI to neurological segmentation. - Andrew Simmons 001; Derek K. Jones; Mark A. Horsfield; Steven C. R. Williams (Int. J. Imaging Syst. Technol., 1999)

Virtual in Vivo Interactive Dissection of White Matter Fasciculi in the Human Brain. - Marco Catani; Robert J. Howard; Sinisa Pajevic; Derek K. Jones (NeuroImage, 2002)

Spatial Normalization and Averaging of Diffusion Tensor MRI Data Sets. - Derek K. Jones; Lewis D. Griffin; Daniel C. Alexander; Marco Catani; Mark A. Horsfield; Robert J. Howard; Steven C. R. Williams (NeuroImage, 2002)

The effect of filter size on VBM analyses of DT-MRI data. - Derek K. Jones; Mark R. Symms; Mara Cercignani; Robert J. Howard (NeuroImage, 2005)

Parsimonious Model Selection for Tissue Segmentation and Classification Applications: A Study Using Simulated and Experimental DTI Data. - Raisa Z. Freidlin; Evren Özarslan; Michal E. Komlosh; Lin-Ching Chang; Cheng Guan Koay; Derek K. Jones; Peter J. Basser (IEEE Trans. Medical Imaging, 2007)

Altered cerebellar feedback projections in Asperger syndrome. - Marco Catani; Derek K. Jones; Eileen M. Daly; Nitzia Embiricos; Quinton Deeley; Luca Pugliese; Sarah Curran; Dene Robertson; Declan G. M. Murphy (NeuroImage, 2008)

Standardized structural magnetic resonance imaging in multicentre studies using quantitative T1 and T2 imaging at 1.5 T. - Sean C. L. Deoni; Steven C. R. Williams; Peter Jezzard; John Suckling; Declan G. M. Murphy; Derek K. Jones (NeuroImage, 2008)

Tractography Gone Wild: Probabilistic Fibre Tracking Using the Wild Bootstrap With Diffusion Tensor MRI. - Derek K. Jones (IEEE Trans. Medical Imaging, 2008)

Visual gamma oscillations and evoked responses: Variability, repeatability and structural MRI correlates. - Suresh D. Muthukumaraswamy; Krish D. Singh; Jennifer B. Swettenham; Derek K. Jones (NeuroImage, 2010)

Partial volume effect as a hidden covariate in DTI analyses. - Sjoerd B. Vos; Derek K. Jones; Max A. Viergever; Alexander Leemans (NeuroImage, 2011)

How and how not to correct for CSF-contamination in diffusion MRI. - Claudia Metzler-Baddeley; Michael J. O'Sullivan; Sonya Bells; Ofer Pasternak; Derek K. Jones (NeuroImage, 2012)

The influence of complex white matter architecture on the mean diffusivity in diffusion tensor MRI of the human brain. - Sjoerd B. Vos; Derek K. Jones; Ben Jeurissen; Max A. Viergever; Alexander Leemans (NeuroImage, 2012)

The CONNECT project: Combining macro- and micro-structure. - Yaniv Assaf; Daniel C. Alexander; Derek K. Jones; Alberto Bizzi; Tim E. J. Behrens; Chris A. Clark; Yoram Cohen; Tim B. Dyrby; Petra S. Huppi; Thomas R. Knösche; Denis Le Bihan; Geoffrey J. M. Parker; et al. (NeuroImage, 2013)

White matter integrity, fiber count, and other fallacies: The do's and don'ts of diffusion MRI. - Derek K. Jones; Thomas R. Knösche; Robert Turner (NeuroImage, 2013)

A pitfall in the reconstruction of fibre ODFs using spherical deconvolution of diffusion MRI data. - Greg D. Parker; A. David Marshall; Paul L. Rosin; N. Drage; Stephen Richmond; Derek K. Jones (NeuroImage, 2013)

CSF contamination contributes to apparent microstructural alterations in mild cognitive impairment. - Rok Berlot; Claudia Metzler-Baddeley; Derek K. Jones; Michael J. O'Sullivan (NeuroImage, 2014)

Why diffusion tensor MRI does well only some of the time: Variance and covariance of white matter tissue microstructure attributes in the living human brain. - Silvia De Santis; Mark Drakesmith; Sonya Bells; Yaniv Assaf; Derek K. Jones (NeuroImage, 2014)

Joint Reconstruction of Multi-Contrast MRI for Multiple Sclerosis Lesion Segmentation. - Pedro A. Gómez; Jonathan I. Sperl; Tim Sprenger; Claudia Metzler-Baddeley; Derek K. Jones; Philipp G. Sämann (Bildverarbeitung für die Medizin, 2015)

Overcoming the effects of false positives and threshold bias in graph theoretical analyses of neuroimaging data. - Mark Drakesmith; Karen Caeyenberghs; Anirban Dutt; Glyn Lewis; Anthony S. David; Derek K. Jones (NeuroImage, 2015)

Simultaneous Parameter Mapping, Modality Synthesis, and Anatomical Labeling of the Brain with MR Fingerprinting. - Pedro A. Gómez; Miguel Molina-Romero; Cagdas Ulas; Guido Bounincontri; Jonathan I. Sperl; Derek K. Jones; Marion I. Menzel; Bjoern H. Menze (MICCAI (3), 2016)

Task complexity and location specific changes of cortical thickness in executive and salience networks after working memory training. - Claudia Metzler-Baddeley; Karen Caeyenberghs; Sonya Foley; Derek K. Jones (NeuroImage, 2016)

T1 relaxometry of crossing fibres in the human brain. - Silvia De Santis; Yaniv Assaf; Ben Jeurissen; Derek K. Jones; Alard Roebroeck (NeuroImage, 2016)

Including diffusion time dependence in the extra-axonal space improves in vivo estimates of axonal diameter and density in human white matter. - Silvia De Santis; Derek K. Jones; Alard Roebroeck (NeuroImage, 2016)

Interactive Computation and Visualization of Structural Connectomes in Real-Time. - Maxime Chamberland; William Gray; Maxime Descoteaux; Derek K. Jones (CNI@MICCAI, 2017)

Dynamics of White Matter Plasticity Underlying Working Memory Training: Multimodal Evidence from Diffusion MRI and Relaxometry. - Claudia Metzler-Baddeley; Sonya Foley; Silvia De Santis; Cyril Charron; Adam Hampshire; Karen Caeyenberghs; Derek K. Jones (J. Cogn. Neurosci., 2017)

q-Space Novelty Detection with Variational Autoencoders. - Aleksei Vasilev; Vladimir Golkov; Ilona Lipp; Eleonora Sgarlata; Valentina Tomassini; Derek K. Jones; Daniel Cremers (CoRR, 2018)

Microstructural imaging of the human brain with a 'super-scanner': 10 key advantages of ultra-strong gradients for diffusion MRI. - Derek K. Jones; Daniel C. Alexander; Richard Bowtell; Mara Cercignani; Flavio Dell'Acqua; Damien J. McHugh; Karla L. Miller; Marco Palombo; Geoffrey J. M. Parker; S. Umesh Rudrapatna; Chantal M. W. Tax (NeuroImage, 2018)

Comparison of Different Tensor Encoding Combinations in Microstructural Parameter Estimation. - Maryam Afzali; Chantal M. W. Tax; Cyrano Chatziantoniou; Derek K. Jones (ISBI, 2019)

Dimensionality reduction of diffusion MRI measures for improved tractometry of the human brain. - Maxime Chamberland; Erika P. Raven; Sila Genc; Kate Duffy; Maxime Descoteaux; Greg D. Parker; Chantal M. W. Tax; Derek K. Jones (NeuroImage, 2019)

Estimating axon conduction velocity in vivo from microstructural MRI. - Mark Drakesmith; Robbert L. Harms; S. Umesh Rudrapatna; Greg D. Parker; C. John Evans; Derek K. Jones (NeuroImage, 2019)

Optimization of graph construction can significantly increase the power of structural brain network studies. - Eirini Messaritaki; Stavros I. Dimitriadis; Derek K. Jones (NeuroImage, 2019)

Sex-specific effects of central adiposity and inflammatory markers on limbic microstructure. - Claudia Metzler-Baddeley; Jilu P. Mole; Erika Leonaviciute; Rebecca Sims; Emma J. Kidd; Benyamin Ertefai; Aurora Kelso-Mitchell; Florence Gidney; Fabrizio Fasano; C. John Evans; Derek K. Jones; Roland J. Baddeley (NeuroImage, 2019)

Cross-scanner and cross-protocol diffusion MRI data harmonisation: A benchmark database and evaluation of algorithms. - Chantal M. W. Tax; Francesco Grussu; Enrico Kaden; Lipeng Ning; S. Umesh Rudrapatna; C. John Evans; Samuel St-Jean; Alexander Leemans; Simon Koppers; Dorit Merhof; Aurobrata Ghosh; Ryutaro Tanno; et al. (NeuroImage, 2019)

Deep learning-based parameter mapping for joint relaxation and diffusion tensor MR Fingerprinting. - Carolin M. Pirkl; Pedro A. Gómez; Ilona Lipp; Guido Buonincontri; Miguel Molina-Romero; Anjany Sekuboyina; Diana Waldmannstetter; Jonathan Dannenberg; Sebastian Endt; Alberto Merola; Joseph R. Whittaker; Valentina Tomassini; et al. (MIDL, 2020)

Tractometry-based Anomaly Detection for Single-subject White Matter Analysis. - Maxime Chamberland; Sila Genc; Erika P. Raven; Greg D. Parker; Adam Cunningham; Joanne Doherty; Marianne B. M. van den Bree; Chantal M. W. Tax; Derek K. Jones (CoRR, 2020)

Strong diffusion gradients allow the separation of intra- and extra-axonal gradient-echo signals in the human brain. - Elena Kleban; Chantal M. W. Tax; Umesh S. Rudrapatna; Derek K. Jones; Richard Bowtell (NeuroImage, 2020)

Tractography in the presence of multiple sclerosis lesions. - Ilona Lipp; Greg D. Parker; Emma C. Tallantyre; Alex Goodall; Steluta Grama; Eleonora Patitucci; Phoebe Heveron; Valentina Tomassini; Derek K. Jones (NeuroImage, 2020)

The dot-compartment revealed? Diffusion MRI with ultra-strong gradients and spherical tensor encoding in the living human brain. - Chantal M. W. Tax; Filip Szczepankiewicz; Markus Nilsson; Derek K. Jones (NeuroImage, 2020)

Detecting microstructural deviations in individuals with deep diffusion MRI tractometry. - Maxime Chamberland; Sila Genc; Chantal M. W. Tax; Dmitri Shastin; Kristin Koller; Erika P. Raven; Adam Cunningham; Joanne Doherty; Marianne B. M. van den Bree; Greg D. Parker; Khalid Hamandi; William P. Gray; et al. (Nat. Comput. Sci., 2021)

SPHERIOUSLY? The challenges of estimating sphere radius non-invasively in the human brain from diffusion MRI. - Maryam Afzali; Markus Nilsson; Marco Palombo; Derek K. Jones (NeuroImage, 2021)

Resolving bundle-specific intra-axonal T2 values within a voxel using diffusion-relaxation tract-based estimation. - Muhamed Barakovic; Chantal M. W. Tax; Umesh S. Rudrapatna; Maxime Chamberland; Jonathan Rafael-Patino; Cristina Granziera; Jean-Philippe Thiran; Alessandro Daducci; Erick Jorge Canales-Rodríguez; Derek K. Jones (NeuroImage, 2021)

MICRA: Microstructural image compilation with repeated acquisitions. - Kristin Koller; Umesh S. Rudrapatna; Maxime Chamberland; Erika P. Raven; Greg D. Parker; Chantal M. W. Tax; Mark Drakesmith; Fabrizio Fasano; David Owen; Garin Hughes; Cyril Charron; C. John Evans; et al. (NeuroImage, 2021)

On the generalizability of diffusion MRI signal representations across acquisition parameters, sequences and tissue types: Chronicles of the MEMENTO challenge. - Alberto De Luca; Andrada Ianus; Alexander Leemans; Marco Palombo; Noam Shemesh; Hui Zhang 005; Daniel C. Alexander; Markus Nilsson; Martijn Froeling; Geert Jan Biessels; Mauro Zucchelli; Matteo Frigo; et al. (NeuroImage, 2021)

Measuring compartmental T2-orientational dependence in human brain white matter using a tiltable RF coil and diffusion-T2 correlation MRI. - Chantal M. W. Tax; Elena Kleban; Maxime Chamberland; Muhamed Barakovic; Umesh S. Rudrapatna; Derek K. Jones (NeuroImage, 2021)

Lossy Compression of Multidimensional Medical Images Using Sinusoidal Activation Networks: An Evaluation Study. - Matteo Mancini; Derek K. Jones; Marco Palombo (CDMRI@MICCAI, 2022)

Mapping the human connectome using diffusion MRI at 300 mT/m gradient strength: Methodological advances and scientific impact. - Qiuyun Fan; Cornelius Eichner; Maryam Afzali; Lars Mueller 008; Chantal M. W. Tax; Mathias Davids; Mirsad Mahmutovic; Boris Keil; Berkin Bilgic; Kawin Setsompop; Hong-Hsi Lee; Qiyuan Tian; et al. (NeuroImage, 2022)

Estimating axial diffusivity in the NODDI model. - Amy F. D. Howard; Michiel Cottaar; Mark Drakesmith; Qiuyun Fan; Susie Yi Huang; Derek K. Jones; Frederik J. Lange; Jeroen Mollink; Suryanarayana Umesh Rudrapatna; Qiyuan Tian; Karla L. Miller; Saâd Jbabdi (NeuroImage, 2022)

Bundle myelin fraction (BMF) mapping of different white matter connections using microstructure informed tractography. - Simona Schiavi; Po-Jui Lu; Matthias Weigel; Antoine Lutti; Derek K. Jones; Ludwig Kappos; Cristina Granziera; Alessandro Daducci (NeuroImage, 2022)

Surface-based tracking for short association fibre tractography. - Dmitri Shastin; Sila Genc; Greg D. Parker; Kristin Koller; Chantal M. W. Tax; C. John Evans; Khalid Hamandi; William P. Gray; Derek K. Jones; Maxime Chamberland (NeuroImage, 2022)

Temporal Diffusion Ratio (TDR) for imaging restricted diffusion: Optimisation and pre-clinical demonstration. - William Warner; Marco Palombo; Renata Cruz; Ross Callaghan; Noam Shemesh; Derek K. Jones; Flavio Dell'Acqua; Andrada Ianus; Ivana Drobnjak (NeuroImage, 2023)

A Skewed Loss Function for Correcting Predictive Bias in Brain Age Prediction. - Hanzhi Wang 002; Matthias Sebastian Treder; David Marshall 001; Derek K. Jones; Yuhua Li 001 (IEEE Trans. Medical Imaging, 2023)

Improving High-Frequency Details in Cerebellum for Brain MRI Super-Resolution. - Hanzhi Wang 002; David Marshall 001; Derek K. Jones; Yuhua Li 001 (ISCC, 2024)

Image Quality Transfer of Diffusion MRI Guided By High-Resolution Structural MRI. - Alp G. Cicimen; Henry F. J. Tregidgo; Matteo Figini; Eirini Messaritaki; Carolyn B. McNabb; Marco Palombo; C. John Evans; Mara Cercignani; Derek K. Jones; Daniel C. Alexander (CDMRI@MICCAI, 2024)

Optimisation of quantitative brain diffusion-relaxation MRI acquisition protocols with physics-informed machine learning. - Álvaro Planchuelo-Gómez; Maxime Descoteaux; Hugo Larochelle; Jana Hutter; Derek K. Jones; Chantal M. W. Tax (Medical Image Anal., 2024)

Outlier detection in cardiac diffusion tensor imaging: Shot rejection or robust fitting? - Sam Coveney; Maryam Afzali; Lars Mueller 008; Irvin Teh; Arka Das; Erica Dall' Armellina; Filip Szczepankiewicz; Derek K. Jones; Jürgen E. Schneider (Medical Image Anal., 2025)

The cognitive cerebellum: linking microstructure to cognitive functions in a healthy population. - Nicole Urbini; Carolyn B. McNabb; Derek K. Jones; Craig Hedge; Eirini Messaritaki; Pedro Luque Laguna; Mara Cercignani (NeuroImage, 2025)