Genome-wide similarity search for transcription factors and their binding sites in a metal-reducing prokaryote Geobacter sulfurreducens. - Bin Yan; Derek R. Lovley; Julia Krushkal (Biosyst., 2007)

Genome Regions Involved in Multiple Regulatory Pathways Identified Using GSEL, A Genome-Wide Database of Regulatory Sequence Elements of Geobacter sulfurreducens. - Julia Krushkal; Marko Puljic; Bin Yan; Jose F. Barbe; Radhakrishnan Mahadevan; Bradley Postier; Regina A. O'Neil; Gemma Reguera; Ching Leang; Laurie N. DiDonato; Cinthia Núñez; Barbara A. Methé; et al. (BMEI (1), 2008)

Computational and Experimental Analysis of Redundancy in the Central Metabolism of Geobacter sulfurreducens. - Daniel Segura; Radhakrishnan Mahadevan; Katy Juarez; Derek R. Lovley (PLoS Comput. Biol., 2008)

Bioinformatic analysis of gene regulation in Geobacter sulfurreducens. - Julia Krushkal; Yanhua Qu; Peter Brown; Sreedhar Sontineni; Toshiyuki Ueki; Katy Juarez; Ching Leang; Enrique Merino; Jeanette Peeples; Jose F. Barbe; Ronald M. Adkins; Derek R. Lovley (BMC Bioinform., 2009)

Genome-scale constraint-based modeling of Geobacter metallireducens. - Jun Sun; Bahareh Sayyar; Jessica E. Butler; Priti Pharkya; Tom Fahland; Iman Famili; Christophe H. Schilling; Derek R. Lovley; Radhakrishnan Mahadevan (BMC Syst. Biol., 2009)

Bioinformatic analysis of gene regulation in the metal-reducing bacterial family Geobacteraceae. - Julia Krushkal; Ronald M. Adkins; Yanhua Qu; Jeanette Peeples; Sreedhar Sontineni; Ching Leang; Peter Brown; Nelson D. Young; Toshiyuki Ueki; Katy Juarez; Derek R. Lovley (BMC Bioinform., 2010)

Constraint-based modeling analysis of the metabolism of two Pelobacter species. - Jun Sun; Shelley A. Haveman; Olivia Bui; Tom Fahland; Derek R. Lovley (BMC Syst. Biol., 2010)

Constraint-Based Modeling of Carbon Fixation and the Energetics of Electron Transfer in Geobacter metallireducens. - Adam M. Feist; Harish Nagarajan; Amelia-Elena Rotaru; Pier-Luc Tremblay; Tian Zhang 004; Kelly P. Nevin; Derek R. Lovley; Karsten Zengler (PLoS Comput. Biol., 2014)