The minimum weight clique partition problem and its application to structural variant calling. - Matthew Hayes; Derrick Mullins (Int. J. Comput. Biol. Drug Des., 2020)

Complex Variant Discovery Using Discordant Cluster Normalization. - Matthew Hayes; Derrick Mullins; Angela Nguyen (J. Comput. Biol., 2021)

HolistIC: leveraging Hi-C and whole genome shotgun sequencing for double minute chromosome discovery. - Matthew Hayes; Angela Nguyen; Rahib Islam; Caryn Butler; Ethan Tran; Derrick Mullins; Chindo Hicks (Bioinform., 2022)