Invited Talk: Genomic Variation and Incipient Speciation in Arabidopsis thaliana. - Detlef Weigel (German Conference on Bioinformatics, 2006)

Identification of plant microRNA homologs. - Tobias Dezulian; Michael Remmert; Javier F. Palatnik; Detlef Weigel; Daniel H. Huson (Bioinform., 2006)

CrossLink: visualization and exploration of sequence relationships between (micro) RNAs. - Tobias Dezulian; Martin H. Schaefer 001; Roland Wiese; Detlef Weigel; Daniel H. Huson (Nucleic Acids Res., 2006)

MSQT for choosing SNP assays from multiple DNA alignments. - Norman Warthmann; Joffrey Fitz; Detlef Weigel (Bioinform., 2007)

Transcript Normalization and Segmentation of Tiling Array Data. - Georg Zeller; Stefan R. Henz; Sascha Laubinger; Detlef Weigel; Gunnar Rätsch (Pacific Symposium on Biocomputing, 2008)

Revealing sequence variation patterns in rice with machine learning methods. - Regina Bohnert; Georg Zeller; Richard M. Clark; Kevin L. Childs; Victor Jun M. Ulat; Renee Stokowski; Dennis Ballinger; Kelly Frazer; David Cox; Richard M. Bruskiewich; C. Robin Buell; Jan Leach; et al. (BMC Bioinform., 2008)

Paired-end RAD-seq for de novo assembly and marker design without available reference. - Eva-Maria Willing; Margarete Hoffmann; Juliane Damaris Klein; Detlef Weigel; Christine Dreyer (Bioinform., 2011)

Efficient branch-and-bound techniques for two-locus association mapping. - Karin Klotzbücher; Yasushi Kobayashi; Nino Shervashidze; Oliver Stegle; Bertram Müller-Myhsok; Detlef Weigel; Karsten M. Borgwardt (BMC Bioinform., 2011)

1001 Proteomes: a functional proteomics portal for the analysis of Arabidopsis thaliana accessions. - Hiren J. Joshi; Katy M. Christiansen; Joffrey Fitz; Jun Cao; Anna Lipzen; Joel Martin; A. Michelle Smith-Moritz; Len A. Pennacchio; Wendy S. Schackwitz; Detlef Weigel; Joshua L. Heazlewood (Bioinform., 2012)

easyGWAS: An integrated interspecies platform for performing genome-wide association studies - Dominik G. Grimm; Bastian Greshake; Stefan Kleeberger; Christoph Lippert; Oliver Stegle; Bernhard Schölkopf; Detlef Weigel; Karsten M. Borgwardt (CoRR, 2012)

Trowel: a fast and accurate error correction module for Illumina sequencing reads. - Eun-Cheon Lim; Jonas Müller; Jörg Hagmann; Stefan R. Henz; Sang-Tae Kim; Detlef Weigel (Bioinform., 2014)

AraPheno: a public database for Arabidopsis thaliana phenotypes. - Ümit Seren; Dominik G. Grimm; Joffrey Fitz; Detlef Weigel; Magnus Nordborg; Karsten M. Borgwardt; Arthur Korte (Nucleic Acids Res., 2017)

The AraGWAS Catalog: a curated and standardized Arabidopsis thaliana GWAS catalog. - Matteo Togninalli; Ümit Seren; Dazhe Meng; Joffrey Fitz; Magnus Nordborg; Detlef Weigel; Karsten M. Borgwardt; Arthur Korte; Dominik G. Grimm (Nucleic Acids Res., 2018)

AraPheno and the AraGWAS Catalog 2020: a major database update including RNA-Seq and knockout mutation data for Arabidopsis thaliana. - Matteo Togninalli; Ümit Seren; Jan A. Freudenthal; J. Grey Monroe; Dazhe Meng; Magnus Nordborg; Detlef Weigel; Karsten M. Borgwardt; Arthur Korte; Dominik G. Grimm (Nucleic Acids Res., 2020)

vcf2gwas: Python API for comprehensive GWAS analysis using GEMMA. - Frank Vogt; Gautam Shirsekar; Detlef Weigel (Bioinform., 2022)

Acanthophis: a comprehensive plant hologenomics pipeline. - Kevin D. Murray; Justin O. Borevitz; Detlef Weigel; Norman Warthmann (J. Open Source Softw., 2024)