Analysis of stacking overlap in nucleic acid structures: algorithm and application. - Pavan Kumar Pingali; Sukanya Halder; Debasish Mukherjee; Sankar Basu; Rahul Banerjee; Devapriya Choudhury; Dhananjay Bhattacharyya (J. Comput. Aided Mol. Des., 2014)

Role of indirect readout mechanism in TATA box binding protein-DNA interaction. - Manas Mondal; Devapriya Choudhury; Jaydeb Chakrabarti; Dhananjay Bhattacharyya (J. Comput. Aided Mol. Des., 2015)

Understanding the relationship between preferential interactions of peptides in water-acetonitrile mixtures with protein-solvent contact surface area. - Monika Phougat; Narinder Singh Sahni; Devapriya Choudhury (J. Comput. Aided Mol. Des., 2024)