matOptimize: a parallel tree optimization method enables online phylogenetics for SARS-CoV-2. - Cheng Ye; Bryan Thornlow; Angie S. Hinrichs; Alexander Kramer; Cade Mirchandani; Devika Torvi; Robert Lanfear; Russell Corbett-Detig; Yatish Turakhia (Bioinform., 2022)