Design Automation for Biological Models: A Pipeline that Incorporates Spatial and Molecular Complexity. - Devin P. Sullivan; Rohan Arepally; Robert F. Murphy; José Juan Tapia; James R. Faeder; Markus Dittrich; Jacob Czech (ACM Great Lakes Symposium on VLSI, 2015)

Unbiased Rare Event Sampling in Spatial Stochastic Systems Biology Models Using a Weighted Ensemble of Trajectories. - Rory M. Donovan; José Juan Tapia; Devin P. Sullivan; James R. Faeder; Robert F. Murphy; Markus Dittrich; Daniel M. Zuckerman (PLoS Comput. Biol., 2016)

SBML level 3 package: spatial processes, version 1, release 1. - James C. Schaff; Anuradha Lakshminarayana; Robert F. Murphy; Frank T. Bergmann; Akira Funahashi; Devin P. Sullivan; Lucian P. Smith (J. Integr. Bioinform., 2023)