Bison: bisulfite alignment on nodes of a cluster. - Devon Patrick Ryan; Dan Ehninger (BMC Bioinform., 2014)

deepTools2: a next generation web server for deep-sequencing data analysis. - Fidel Ramírez; Devon Patrick Ryan; Björn A. Grüning; Vivek Bhardwaj 002; Fabian Kilpert; Andreas S. Richter; Steffen Heyne; Friederike Dündar; Thomas Manke (Nucleic Acids Res., 2016)

Parkour LIMS: high-quality sample preparation in next generation sequencing. - Evgeny Anatskiy; Devon Patrick Ryan; Björn A. Grüning; Laura Arrigoni; Thomas Manke; Ulrike Bönisch (Bioinform., 2019)

snakePipes: facilitating flexible, scalable and integrative epigenomic analysis. - Vivek Bhardwaj 002; Steffen Heyne; Katarzyna Sikora; Leily Rabbani; Michael Rauer; Fabian Kilpert; Andreas S. Richter; Devon Patrick Ryan; Thomas Manke (Bioinform., 2019)