A Comparative Study of Network Motifs in the Integrated Transcriptional Regulation and Protein Interaction Networks of Shewanella. - Dewu Ding; Xiao Sun 006 (IEEE ACM Trans. Comput. Biol. Bioinform., 2019)

Relating Translation Efficiency to Protein Networks Provides Evolutionary Insights in Shewanella and Its Implications for Extracellular Electron Transfer. - Dewu Ding; Xiao Sun 006 (IEEE ACM Trans. Comput. Biol. Bioinform., 2022)

GCNA-Cluster: A Gene Co-Expression Network Alignment to Cluster Cancer Patients Algorithm for Identifying Subtypes of Pancreatic Ductal Adenocarcinoma. - Jing Yang; Zhengshu Lu; Xu Chen; Deling Xu; Dewu Ding; Yanrui Ding (IEEE ACM Trans. Comput. Biol. Bioinform., 2023)

Prediction of Drug-Target Interactions With High- Quality Negative Samples and a Network-Based Deep Learning Framework. - Zhixing Cheng; Deling Xu; Dewu Ding; Yanrui Ding (IEEE J. Biomed. Health Informatics, 2025)