SignaLink 2 - a signaling pathway resource with multi-layered regulatory networks. - Dávid Fazekas; Mihály Koltai; Dénes Türei; Dezsö Módos; Máté Pálfy; Zoltán Dúl; Lilian Zsákai; Máté Szalay-Beko; Katalin Lenti; Illés J. Farkas; Tibor Vellai; Peter Csermely; et al. (BMC Syst. Biol., 2013)

ADDI: Recommending alternatives for drug-drug interactions with negative health effects. - Milad Allahgholi; Hossein Rahmani 002; Delaram Javdani; Gerhard Weiss 001; Dezsö Módos (Comput. Biol. Medicine, 2020)

EMDIP: An Entropy Measure to Discover Important Proteins in PPI networks. - Hamid Bashiri; Hossein Rahmani 002; Vahid Bashiri; Dezsö Módos; Andreas Bender 002 (Comput. Biol. Medicine, 2020)

A handy meta-analysis tool for IBD research. - Dezsö Módos; John P. Thomas; Tamás Korcsmáros (Nat. Comput. Sci., 2021)

ViralLink: An integrated workflow to investigate the effect of SARS-CoV-2 on intracellular signalling and regulatory pathways. - Agatha Treveil; Balázs Bohár; Padhmanand Sudhakar; Lejla Gul; Luca Csabai; Marton Olbei; Martina Poletti; Matthew Madgwick; Tahila Andrighetti; Isabelle Hautefort; Dezsö Módos; Tamás Korcsmáros (PLoS Comput. Biol., 2021)

DDREL: From drug-drug relationships to drug repurposing. - Milad Allahgholi; Hossein Rahmani 002; Delaram Javdani; Zahra Sadeghi-Adl; Andreas Bender 002; Dezsö Módos; Gerhard Weiss 001 (Intell. Data Anal., 2022)

SignaLink3: a multi-layered resource to uncover tissue-specific signaling networks. - Luca Csabai; Dávid Fazekas; Tamás Kadlecsik; Máté Szalay-Beko; Balázs Bohár; Matthew Madgwick; Dezsö Módos; Marton Olbei; Lejla Gul; Padhmanand Sudhakar; János Kubisch; Oyebode J. Oyeyemi; et al. (Nucleic Acids Res., 2022)