An Object-Oriented Time Warp Simulation Kernel. - Radharamanan Radhakrishnan; Dale E. Martin; Malolan Chetlur; Dhananjai Madhava Rao; Philip A. Wilsey (ISCOPE, 1998)

Unsynchronized Parallel Discrete Event Simulation. - Dhananjai Madhava Rao; Narayanan V. Thondugulam; Radharamanan Radhakrishnan; Philip A. Wilsey (WSC, 1998)

Relaxing Causal Constraints in PDES. - Narayanan V. Thondugulam; Dhananjai Madhava Rao; Radharamanan Radhakrishnan; Philip A. Wilsey (IPPS/SPDP, 1999)

An Object-Oriented Framework for Parallel Simulation of Ultra-large Communication Networks. - Dhananjai Madhava Rao; Philip A. Wilsey (ISCOPE, 1999)

Simulation of Ultra-Large Communication Networks. - Dhananjai Madhava Rao; Philip A. Wilsey (MASCOTS, 1999)

Study of a Multilevel Approach to Partitioning for Parallel Logic Simulation. - Swaminathan Subramanian; Dhananjai Madhava Rao; Philip A. Wilsey (IPDPS, 2000)

Parallel Co-Simulation of Conventional and Active Networks. - Dhananjai Madhava Rao; Philip A. Wilsey (MASCOTS, 2000)

Dynamic component substitution in web-based simulation. - Dhananjai Madhava Rao; Philip A. Wilsey (WSC, 2000)

Web-based network analysis and design. - Dhananjai Madhava Rao; Radharamanan Radhakrishnan; Philip A. Wilsey (ACM Trans. Model. Comput. Simul., 2000)

Modeling and Simulation of Active Networks. - Dhananjai Madhava Rao; Philip A. Wilsey (Annual Simulation Symposium, 2001)

Optimizing Costs of Web-based Modeling and Simulation. - Dhananjai Madhava Rao; Harold W. Carter; Philip A. Wilsey (IPDPS, 2001)

Multi-Resolution Network Simulations Using Dynamic Component Substitution. - Dhananjai Madhava Rao; Philip A. Wilsey (MASCOTS, 2001)

Applying Multilevel Partitioning to Parallel Logic Simulation. - Swaminathan Subramanian; Dhananjai Madhava Rao; Philip A. Wilsey (Parallel Distributed Comput. Pract., 2001)

A performance and scalability analysis framework for parallel discrete event simulators. - Vijay Balakrishnan; Radharamanan Radhakrishnan; Dhananjai Madhava Rao; Nael B. Abu-Ghazaleh; Philip A. Wilsey (Simul. Pract. Theory, 2001)

Web-based simulation 2: performance prediction of dynamic component substitutions. - Dhananjai Madhava Rao; Philip A. Wilsey (WSC, 2002)

Analysis and Simulation of Mixed-Technology VLSI Systems. - Dale E. Martin; Radharamanan Radhakrishnan; Dhananjai Madhava Rao; Malolan Chetlur; Krishnan Subramani; Philip A. Wilsey (J. Parallel Distributed Comput., 2002)

An ultra-large-scale simulation framework. - Dhananjai Madhava Rao; Philip A. Wilsey (J. Parallel Distributed Comput., 2002)

An Active Networks Simulation Environment. - Dhananjai Madhava Rao; Philip A. Wilsey (Simul., 2002)

Accelerating Spatially Explicit Simulations of Spread of Lyme Disease. - Dhananjai Madhava Rao; Philip A. Wilsey (Annual Simulation Symposium, 2005)

Predicting Performance of Resolution Changes in Parallel Simulations. - Dhananjai Madhava Rao; Philip A. Wilsey (PADS, 2006)

Applying parallel, dynamic-resolution simulations to accelerate VLSI power estimation. - Dhananjai Madhava Rao; Philip A. Wilsey (WSC, 2006)

Accelerating ATM Simulations Using Dynamic Component Substitution (DCS). - Dhananjai Madhava Rao; Philip A. Wilsey (Simul., 2006)

Parallel simulation of the global epidemiology of Avian Influenza. - Dhananjai Madhava Rao; Alexander Chernyakhovsky (WSC, 2008)

Predicting Performance Impacts due to Resolution Changes in Parallel Simulations. - Dhananjai Madhava Rao; Philip A. Wilsey (Simul., 2008)

Modeling and analysis of global epidemiology of avian influenza. - Dhananjai Madhava Rao; Alexander Chernyakhovsky; Victoria Rao (Environ. Model. Softw., 2009)

PEACE: Parallel Environment for Assembly and Clustering of Gene Expression. - Dhananjai Madhava Rao; J. C. Moler; Mufit Ozden; Y. Zhang; C. Liang; John E. Karro (Nucleic Acids Res., 2010)

Workshop: Transcript assembly through a d2-based MST approach. - Yuan Zhang; Dhananjai Madhava Rao; Jens Mueller; Mufit Ozden; Chun Liang; John E. Karro (ICCABS, 2011)

Poster: De novo expression fragment assembly from Spanning Trees (EAST). - Yuan Zhang; Dhananjai Madhava Rao; Mufit Ozden; Jens Mueller; Praveen Raj Kumar; Chun Liang; John E. Karro (ICCABS, 2012)

Accelerating parallel agent-based epidemiological simulations. - Dhananjai Madhava Rao (SIGSIM-PADS, 2014)

Computing Efficiency in Education. - Dhananjai Madhava Rao (Computer, 2015)

Eliciting Characteristics of H5N1 in High-Risk Regions Using Phylogeography and Phylodynamic Simulations. - Neil Giridharan; Dhananjai Madhava Rao (Comput. Sci. Eng., 2016)

Efficient parallel simulation of spatially-explicit agent-based epidemiological models. - Dhananjai Madhava Rao (J. Parallel Distributed Comput., 2016)

Music maker: Using music to introduce coding and concurrency to young learners. - Dhananjai Madhava Rao (FIE, 2017)

Multi-tier Priority Queues and 2-tier Ladder Queue for Managing Pending Events in Sequential and Optimistic Parallel Simulations. - Julius Higiro; Meseret Gebre; Dhananjai Madhava Rao (SIGSIM-PADS, 2017)

A parallel framework for ab initio transcript-clustering. - Dhananjai Madhava Rao (ICSE (Companion Volume), 2018)

Performance comparison of Cross Memory Attach capable MPI vs. Multithreaded Optimistic Parallel Simulations. - Dhananjai Madhava Rao (SIGSIM-PADS, 2018)

Accelerating Clustering using Approximate Spanning Tree and Prime Number Based Filter. - Dhananjai Madhava Rao; Sutharzan Sreeskandarajan; Chun Liang (IPDPS Workshops, 2019)

Automatic generation of agent-based models of migratory waterfowl for epidemiological analyses. - Dhananjai Madhava Rao; Alexander Chernyakhovsky (Int. J. Comput. Aided Eng. Technol., 2019)

Managing Pending Events in Sequential and Parallel Simulations Using Three-tier Heap and Two-tier Ladder Queue. - Dhananjai Madhava Rao; Julius Higiro (ACM Trans. Model. Comput. Simul., 2019)