Distributed Representations for Biological Sequence Analysis. - Dhananjay Kimothi; Akshay Soni; Pravesh Biyani; James M. Hogan (CoRR, 2016)

Metric learning on biological sequence embeddings. - Dhananjay Kimothi; Ankita Shukla; Pravesh Biyani; Saket Anand; James M. Hogan (SPAWC, 2017)

Sequence Representations and Their Utility for Predicting Protein-Protein Interactions. - Dhananjay Kimothi; Pravesh Biyani; James M. Hogan; Melissa J. Davis (IEEE ACM Trans. Comput. Biol. Bioinform., 2023)