A New Approach to Clustering Biological Data Using Message Passing. - Huimin Geng; Dhundy Bastola; Hesham H. Ali (CSB, 2004)

On Clustering Biological Data Using Unsupervised and Semi-Supervised Message Passing. - Huimin Geng; Xutao Deng; Dhundy Bastola; Hesham H. Ali (BIBE, 2005)

Link test - A statistical method for finding prostate cancer biomarkers. - Xutao Deng; Huimin Geng; Dhundy Bastola; Hesham H. Ali (Comput. Biol. Chem., 2006)

Use of Average Mutual Information based Species Signature for Fungal and Mycobacterial Differentiation. - Khalid Sayood; Dhundy Bastola; Peter Iwen; Steven H. Hinrichs (BIOCOMP, 2007)

RFLP-WAVE Analysis for Rapid Identification of Medically Important Fungi. - Dhundy Bastola; Sarfraz H. Chandio; Peter Iwen; Steven H. Hinrichs; Hesham H. Ali (HICSS, 2008)

A parallel architecture for regulatory motif algorithm assessment. - Daniel Quest; Kathryn Dempsey; Mohammad Shafiullah; Dhundy Bastola; Hesham H. Ali (IPDPS, 2008)

MTAP: The Motif Tool Assessment Platform. - Daniel Quest; Kathryn Dempsey; Mohammad Shafiullah; Dhundy Bastola; Hesham H. Ali (BMC Bioinform., 2008)

Classification and Identification of fungal Sequences Using Characteristic restriction endonuclease Cut Order. - Rajib Sengupta; Dhundy Bastola; Hesham H. Ali (J. Bioinform. Comput. Biol., 2010)

Identifying modular function via edge annotation in gene correlation networks using Gene Ontology search. - Kathryn Dempsey; Ishwor Thapa; Dhundy Bastola; Hesham H. Ali (BIBM Workshops, 2011)

A Novel Correlation Networks Approach for the Identification of Gene Targets. - Kathryn Dempsey; Stephen Bonasera; Dhundy Bastola; Hesham H. Ali (HICSS, 2011)

Enriching miRNA binding site specificity with sequence profile based filtering of 3'-UTR region of mRNA. - Jasjit K. Banwait; Hesham H. Ali; Dhundy Bastola (BIBM Workshops, 2012)

A meta-genome sequencing and assembly preprocessing algorithm inspired by restriction site base composition. - Oliver Bonham-Carter; Hesham H. Ali; Dhundy Bastola (BIBM Workshops, 2012)

A comparison between hierarchical clustering and community detection method in the collection of gene targets for molecular identification of pathogenic fungi. - Ishwor Thapa; Sanjukta Bhowmick; Dhundy Bastola (BIBM Workshops, 2012)

Cycles of Electronic Health Records Adaptation by Physicians: How Do the Positive and Negative Experiences with the EHR System Affect Physicians' EHR Adaptation Process? - Cherie Noteboom; Dhundy Bastola; Sajda Qureshi (HICSS, 2012)

A Comparison of Computational Approaches in the Molecular Identification of Pathogenic Organisms. - Dhundy Bastola; Scott McGrath; Sanjukta Bhowmick; Ishwor Thapa (HISB, 2012)

Functional identification in correlation networks using gene ontology edge annotation. - Kathryn Dempsey; Ishwor Thapa; Dhundy Bastola; Hesham H. Ali (Int. J. Comput. Biol. Drug Des., 2012)

Comparative Analysis of Software Repository Metrics in BioPerl, BioJava and BioRuby. - M. Rahmani; Dhundy Bastola; Lotfollah Najjar (ICCS, 2012)

Evidence of a Pathway of Reduction in Bacteria: Reduced Quantities of Restriction Sites Impact tRNA Activity in a Trial Set. - Oliver Bonham-Carter; Lotfollah Najjar; Dhundy Bastola (BCB, 2013)

Modeling the Effects of Microgravity on Oxidation in Mitochondria: A Protein Damage Assessment across a Diverse Set of Life Forms. - Oliver Bonham-Carter; Jay Pedersen; Lotfollah Najjar; Dhundy Bastola (ICDM Workshops, 2013)

On Mining Biological Signals Using Correlation Networks. - Kathryn Dempsey; Ishwor Thapa; Claudia Cortes; Zach Eriksen; Dhundy Bastola; Hesham H. Ali (ICDM Workshops, 2013)

Concept to commit: A pattern designed to trace code changes from user requests to change implementation by analyzing mailing lists and code repositories. - Scott McGrath; Kiran Bastola; Harvey P. Siy (DAPSE@ICSE, 2013)

sEncrypt: An Encryption Algorithm Inspired from Biological Processes. - Oliver Bonham-Carter; Abhishek Parakh; Dhundy Bastola (TrustCom/ISPA/IUCC, 2013)

A base composition analysis of natural patterns for the preprocessing of metagenome sequences. - Oliver Bonham-Carter; Hesham H. Ali; Dhundy Bastola (BMC Bioinform., 2013)

Evidence of post translational modification bias extracted from the tRNA and corresponding amino acid interplay across a set of diverse organisms. - Oliver Bonham-Carter; Ishwor Thapa; Dhundy Bastola (BCB, 2014)

DTC genetic testing and consumer comprehension. - Scott McGrath; Dhundy Kiran Bastola (BCB, 2014)

PathwayLinks: Network analysis of metabolic pathways across bacterial organisms in a community. - Jay Pedersen; Ryan Patch; Lotfollah Najjar; Dhundy Bastola (BIBM, 2014)

Alignment-free genetic sequence comparisons: a review of recent approaches by word analysis. - Oliver Bonham-Carter; Joe Steele; Dhundy Bastola (Briefings Bioinform., 2014)

A content and structural assessment of oxidative motifs across a diverse set of life forms. - Oliver Bonham-Carter; Jay Pedersen; Dhundy Bastola (Comput. Biol. Medicine, 2014)

Optimisation of miRNA-mRNA relationship prediction using biological features. - Jasjit K. Banwait; Hesham H. Ali; Dhundy Bastola (Int. J. Comput. Biol. Drug Des., 2014)

A novel approach to identify shared fragments in drugs and natural products. - Akshay Balasubramanya; Ishwor Thapa; Dhundy Bastola; Dario Ghersi (BIBM, 2015)

Guilt-by association approach to identify novel human aging-related genes using protein domains. - Jasjit K. Banwait; Schuyler P. Dougherty; Ishwor Thapa; Dhundy Kiran Bastola (BIBM, 2015)

A text mining application for linking functionally stressed-proteins to their post-translational modifications. - Oliver Bonham-Carter; Dhundy R. Bastola (BIBM, 2015)

A novel signature for identification of upstream alternative translation initiation sites. - Kritika Karri; Dhundy R. Bastola (BIBM, 2015)

Transcriptome analysis of HIV-1 virus in understanding the effect of antiretroviral drugs (cART) and methamphetamine on the virus. - Ishwor Thapa; Howard S. Fox; Dhundy R. Bastola (BIBM, 2015)

An alternative database approach for management of SNOMED CT and improved patient data queries. - W. Scott Campbell; Jay Pedersen; James C. McClay; Praveen Rao 001; Dhundy Bastola; James R. Campbell 001 (J. Biomed. Informatics, 2015)

Forecasting the Spread of Mosquito-Borne Disease using Publicly Accessible Data: A Case Study in Chikungunya. - Kathryn M. Cooper; Dhundy Bastola; Robin A. Gandhi; Dario Ghersi; Steven H. Hinrichs; Marsha Morien; Ann L. Fruhling (AMIA, 2016)

Immune based prognostic biomarkers for multiple anticancer therapies in lung adenocarcinoma. - Kritika Karri; Dhundy R. Bastola (BIBM, 2016)

PTM Tracker: A system for determining trends of PTM modification sites relative to protein domains. - Oliver Bonham-Carter; Dhundy R. Bastola (EIT, 2016)

Proteins localised to human mitochondria show structural element enrichment in their corresponding mRNA. - Jasjit K. Banwait; Kaitlin A. Goettsch; Dhundy R. Bastola (Int. J. Comput. Biol. Drug Des., 2016)

Developing a concussion assessment mHealth app for certified Athletic Trainers. - Scott P. McGrath; Melanie L. McGrath; Dhundy Bastola (AMIA, 2017)

Investigation and utilization of personal food computers for research in drug development and biomedicine. - Almog Boanos; Anitha Sri Mothukuri; Kaitlin A. Goettsch; Dhundy Kiran Bastola (BIBM, 2017)

CuHerbDB- for pharmacogenomics and study of phytochemicals in culinary and medicinal herbs. - Suganya Chandrababu; Dhundy R. Bastola (BIBM, 2017)

Using gait parameters to recognize various stages of Parkinson's disease. - Elham Rastegari; Vivien Marmelat; Lotfollah Najjar; Dhundy Bastola; Hesham H. Ali (BIBM, 2017)

A study of bias and increasing organismal complexity from their post-translational modifications and reaction site interplays. - Oliver Bonham-Carter; Ishwor Thapa; Steven G. From; Dhundy Bastola (Briefings Bioinform., 2017)

Comparative Analysis of Graph and Relational Databases using HerbMicrobeDB. - Suganya Chandrababu; Dhundy R. Bastola (ICHI Workshops, 2018)

Automation of Personal Food Computers for Research in Drug Development and Biomedicine. - Almog Boanos; Suganya Chandrababu; Dhundy Bastola (IIAI-AAI, 2018)

Utilizing Twitter data for analysis of chemotherapy. - Ling Zhang; Magie Hall; Dhundy Bastola (Int. J. Medical Informatics, 2018)

Integrated Network-Based Approach for the Treatment & Prevention of IBD with Natural Products. - Suganya Chandrababu; Dhundy Bastola (BIBE, 2019)

Multi-Stage Probabilistic Bipartite Graph Algorithm - Effect of Herbal Medicines on the Gut Ecosystem. - Suganya Chandrababu; Dhundy R. Bastola (BIBM, 2019)

Graph Model for the Identification of Multi-target Drug Information for Culinary Herbs. - Suganya Chandrababu; Dhundy Bastola (IWBBIO (1), 2019)

Multiplatform biomarker identification using a data-driven approach enables single-sample classification. - Ling Zhang; Ishwor Thapa; Christian Haas 003; Dhundy Bastola (BMC Bioinform., 2019)

An Integrated Approach to Recognize Potential Protective Effects of Culinary Herbs Against Chronic Diseases. - Suganya Chandrababu; Dhundy Bastola (J. Heal. Informatics Res., 2019)

Cyber Autopsies: The Integration of Digital Forensics into Medical Contexts. - George Grispos; Kiran Bastola (CBMS, 2020)

Utilizing Oncology-Related Social Media Content to Model Information-Seeking Behaviors Towards a Model of Shared Decision Making. - Margeret Hall; Sharon Obasi; Dhundy Bastola (CBMS, 2020)

A Novel Prediction Model for Discovering Beneficial Effects of Natural Compounds in Drug Repurposing. - Suganya Chandrababu; Dhundy Bastola (IWBBIO, 2020)

Statistical Prediction Models for Identifying the Microbial Diversity and Interactions Due to Fixed Periodontal Appliances. - Suganya Chandrababu; Dhundy Bastola; Sheela Premaraj (ICBRA, 2021)

Identification of Cross-feeding Metabolism Reveals Oral-Microbiome Modulated Host Behavior. - Suganya Chandrababu; Dhundy R. Bastola (BIBM, 2022)

Investigating stagnant clinical outcomes after fecal microbiome transplant in autism spectrum disorder. - Caleb Pecka; Dhundy Bastola (BIBM, 2022)